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BaseInfo

ncRNA ID	novel_zma_miR10780
Species	Zea mays
Class	miRNA
Genome position	Chr4:163230783-163230849 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	24
Mature sequence(if miRNA)	1 - AGAUCUUGGCGCCGACCCCCGUGU - 24
Stem-loop(if miRNA)	--      -        A     G     G  GCG   AGAUCU UGGCGCCG CCCCC UGUCG CG   C   |||||| |||||||| ||||| ||||| ||   UCUAGA ACCGCGGC GGGGG ACGGU GC   U GU      U        -     G     -  ACA
Stem-loop sequence	AGAUCUUGGCGCCGACCCCCGUGUCGGCGGCGCUACACGUGGCAGGGGGGCGGCGCCAUAGAUCUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008668233.1	ncRNA:24   UGUGCCCCCAGCCGCGGU-UCUAGA   1   *==|||||||||||||||-|||||| targets:179   CUGCGGGGGUCGGCGCCAUAGAUCU   203 Target Full Sequence	3.0	PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA	NA	coding protein	psRNATarget
XM_008668233.1	ncRNA:24   UGUGCCCCCAGCCGCGGU-UCUAGA   1   *||*||||||||||||||-|||||| targets:239   UCAGGGGGGUCGGCGCCACAGAUCU   263 Target Full Sequence	3.0	PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA	NA	coding protein	psRNATarget
XM_020538176.1	ncRNA:24   UGUGC---CCCCAGCCGCGGUUCUAGA   1   *|==|---||||||||||||||||||| targets:341   UCGUGUCAGGGGUCGGCGCCAAGAUCU   367 Target Full Sequence	3.0	PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA	NA	coding protein	psRNATarget
XM_020538176.1	ncRNA:24   UGUGCCCCCAGCCGCGGU-UCUAGA   1   **||*|||||||||||||-|||||| targets:287   CGACCGGGGUCGGCGCCAUAGAUCU   311 Target Full Sequence	3.0	PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA	NA	coding protein	psRNATarget
EU959730.1	ncRNA:24   UGUGCCCC-CAGCCGCGGUUCUAGA   1   *||*||||-|||||||||||||||| targets:1511   UCAAGGGGUGUCGGCGCCAAGAUCU   1535 Target Full Sequence	2.0	Zea mays clone 219696 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149941.1	ncRNA:24   UGUGCCCC-CAGCCGCGGUUCUAGA   1   *||*||||-|||||||||||||||| targets:1511   UCAAGGGGUGUCGGCGCCAAGAUCU   1535 Target Full Sequence	2.0	Zea mays Core-2/I-branching beta-16-N-acetylglucosaminyltransferase family protein (LOC100276060), mRNA	NA	coding protein	psRNATarget