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BaseInfo

ncRNA ID	novel_zma_miR10744
Species	Zea mays
Class	miRNA
Genome position	Chr10:23415052-23415105 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	21
Mature sequence(if miRNA)	1 - UAGAAAUCCCUUGAGAAAUUG - 21
Stem-loop(if miRNA)	---U    A         AAA     GUU     AGAA UCCCUUGAG   UUGGU   C     |||| |||||||||   |||||     UCUU AGGGAAUUC   GAUCA   C UUAU    -         --C     AAC
Stem-loop sequence	UAGAAAUCCCUUGAGAAAUUGGUGUUCCCAAACUAGCCUUAAGGGAUUCUUAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654792.2	ncRNA:21   GUUAAAGAGUUCCCUAAAGAU   1   |=||||||||=|||||||||* targets:1612   CGAUUUCUCAGGGGAUUUCUU   1632 Target Full Sequence	2.5	PREDICTED: Zea mays probable plastid-lipid-associated protein 12, chloroplastic (LOC103633115), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008654791.2	ncRNA:21   GUUAAAGAGUUCCCUAAAGAU   1   |=||||||||=|||||||||* targets:1543   CGAUUUCUCAGGGGAUUUCUU   1563 Target Full Sequence	2.5	PREDICTED: Zea mays probable plastid-lipid-associated protein 12, chloroplastic (LOC103633115), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654793.2	ncRNA:21   GUUAAAGAGUUCCCUAAAGAU   1   |=||||||||=|||||||||* targets:1505   CGAUUUCUCAGGGGAUUUCUU   1525 Target Full Sequence	2.5	PREDICTED: Zea mays probable plastid-lipid-associated protein 12, chloroplastic (LOC103633115), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EZ105942.1	ncRNA:21   GUUAAAGAGUUCCCUAAAGAU   1   =|*|||=|||||||||||||| targets:86   UAUUUUUUCAAGGGAUUUCUA   106 Target Full Sequence	2.0	TSA: Zea mays contig41600, mRNA sequence	NA	coding protein	psRNATarget
XM_020547422.1	ncRNA:21   GUUAAAGAGUUCCCUAAAGAU   1   ||*||||*||||||||||||| targets:2283   CAUUUUCCCAAGGGAUUUCUA   2303 Target Full Sequence	2.0	PREDICTED: Zea mays 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (LOC100193732), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EU957492.1	ncRNA:21   GUUAAAGAGUUCCCUAAAGAU   1   ==||||=*||||||||||||| targets:1703   UGAUUUUCCAAGGGAUUUCUA   1723 Target Full Sequence	2.0	Zea mays clone 1594874 mRNA sequence	NA	coding protein	psRNATarget
XM_008660377.2	ncRNA:21   GUUAAAGAGUUCCCUAAAGAU   1   ||*|||||||||*|||||||| targets:571   CAUUUUCUCAAGUGAUUUCUA   591 Target Full Sequence	2.5	PREDICTED: Zea mays cell growth defect factor 2 (LOC100282436), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT036076.1	ncRNA:21   GUUAAAGAGUUCCCUAAAGAU   1   ||*||||*||||||||||||| targets:804   CAUUUUCCCAAGGGAUUUCUA   824 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0094C03 mRNA, complete cds	NA	coding protein	psRNATarget
JB166927.1	ncRNA:21   GUUAAAGAGUUCCCUAAAGAU   1   ||||||*|||||*|||||||| targets:19   CAAUUUAUCAAGAGAUUUCUA   39 Target Full Sequence	2.5	Sequence 4591 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238596.1	ncRNA:21   GUUAAAGAGUUCCCUAAAGAU   1   ||||||*|||||*|||||||| targets:19   CAAUUUAUCAAGAGAUUUCUA   39 Target Full Sequence	2.5	Sequence 4591 from Patent EP2985353	NA	coding protein	psRNATarget
HI406466.1	ncRNA:21   GUUAAAGAGUUCCCUAAAGAU   1   ||||||*|||||*|||||||| targets:19   CAAUUUAUCAAGAGAUUUCUA   39 Target Full Sequence	2.5	Sequence 4591 from Patent EP2074227	NA	coding protein	psRNATarget
EZ080886.1	ncRNA:21   GUUAAAGAGUUCCCUAAAGAU   1   =||||||*||||*|||||||| targets:28   UAAUUUCCCAAGAGAUUUCUA   48 Target Full Sequence	2.5	TSA: Zea mays contig16525, mRNA sequence	NA	coding protein	psRNATarget
EZ089575.1	ncRNA:21   GUUAAAGAGUUCCCUAAAGAU   1   =|=|||**||||||||||||| targets:81   UAGUUUGGCAAGGGAUUUCUA   101 Target Full Sequence	3.0	TSA: Zea mays contig25221, mRNA sequence	NA	coding protein	psRNATarget