Search result

BaseInfo

ncRNA ID novel_zma_miR10740
Species Zea mays
Class miRNA
Genome position Chr3:57622045-57622118 [-]
Reference genome RefGen_v4
Source SRR5100248
Length 24
Mature sequence(if miRNA) 51 - AGGGGAUUGGAGGGCUAAAAUCCU - 74
Stem-loop(if miRNA) --AGG        -          -  --       CAA
     GGAUUGGA GGGCUAAAAU CC  UCUUAUU   A
     |||||||| |||||||||| ||  |||||||
     CCUAACCU CCCGAUUUUA GG  AGGAUAA   A
UCUCA        A          A  GA       UUU
Stem-loop sequence AGGGGAUUGGAGGGCUAAAAUCCUCUUAUUCAAAAUUUAAUAGGAAGGGAAUUUUAGCCCAUCCAAUCCACUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020539411.1
ncRNA:24   UCCUAAAAUCGGG-AGGUUAGGGGA   1
  =||||||||||||-|||||||||||
targets:3493   GGGAUUUUAGCCCCUCCAAUCCCCU   3517

3.0 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020539397.1
ncRNA:24   UCCUAAAAUCGGG-AGGUUAGGGGA   1
  =||||||||||||-|||||||||||
targets:3528   GGGAUUUUAGCCCCUCCAAUCCCCU   3552

3.0 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA NA coding protein psRNATarget
EU962060.1
ncRNA:24   UCCUAAAAUCGGGAGGUUAGGGGA   1
  *****|||||||||||||||=||*
targets:1027   UUACGUUUAGCCCUCCAAUCUCCA   1050

2.5 Zea mays clone 239942 mRNA sequence NA coding protein psRNATarget
XM_008665539.2
ncRNA:24   UCCUAAAAUCGGGAGGUUAGGGGA   1
  *****|||||||||||||||=||*
targets:1063   UUACGUUUAGCCCUCCAAUCUCCA   1086

2.5 PREDICTED: Zea mays farnesylcysteine lyase (LOC103642227), mRNA NA coding protein psRNATarget