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BaseInfo

ncRNA ID novel_zma_miR10739
Species Zea mays
Class miRNA
Genome position Chr3:59635875-59636019 [-]
Reference genome RefGen_v4
Source SRR5100248
Length 21
Mature sequence(if miRNA) 1 - AAGUGACUUAUAAUUUGGAAC - 21
Stem-loop(if miRNA) --       A  U                UC                       AACCAACUU AUAUUAAAUAU
  UCCAAAU AU AGUCACUUUGGCUUUG  CUAAGUCAAACUUCUUUAACUUU         U           A
  ||||||| || ||||||||||||||||  |||||||||||||||||||||||         |           U
  AGGUUUA UA UCAGUGAAAUCGAAAU  GAUUCAGUUUGAAGAGAUUGAAA         G           A
CA       A  U                GA                       ------CCA CAUCUACAAUC
Stem-loop sequence UCCAAAUAAUUAGUCACUUUGGCUUUGUCCUAAGUCAAACUUCUUUAACUUUAACCAACUUUAUAUUAAAUAUAUACUAACAUCUACGACCAAAGUUAGAGAAGUUUGACUUAGAGUAAAGCUAAAGUGACUUAUAAUUUGGAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001165451.1
ncRNA:21   CAAGGUUUAAUAUUCAGUGAA   1
  |||||||||||||||||||||
targets:1526   GUUCCAAAUUAUAAGUCACUU   1546

0.0 Zea mays uncharacterized LOC100275548 (LOC100275548), mRNA NA coding protein psRNATarget
BT043140.1
ncRNA:21   CAAGGUUUAAUAUUCAGUGAA   1
  |||||||||||||||||||||
targets:1526   GUUCCAAAUUAUAAGUCACUU   1546

0.0 Zea mays full-length cDNA clone ZM_BFc0108F17 mRNA, complete cds NA coding protein psRNATarget
EU953922.1
ncRNA:21   CAAGGUUUAAUAUUCAGUGAA   1
  ||||||=||||||||||=|||
targets:1185   GUUCCAGAUUAUAAGUCGCUU   1205

2.5 Zea mays clone 1449618 mRNA sequence NA coding protein psRNATarget
EU956677.1
ncRNA:21   CAAGGUUUAAUAUUCAGUGAA   1
  |||||||||||*|||||||||
targets:1900   GUUCCAAAUUACAAGUCACUU   1920

1.5 Zea mays clone 1570443 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT066567.1
ncRNA:21   CAAGGUUUAAUAUUCAGUGAA   1
  ***|||||||||||||=||||
targets:1532   UCACCAAAUUAUAAGUUACUU   1552

2.5 Zea mays full-length cDNA clone ZM_BFb0027J20 mRNA, complete cds NA coding protein psRNATarget
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