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BaseInfo

ncRNA ID ath-miRf10115-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - ACCAUCUUCUUCGUCUUCGCC - NA
Stem-loop(if miRNA) U    AAU   U         AU  -UA  C   GAA  GCAAUCACAGC
 UGAC   GGC GAAGAUGAA  AG   GU GAA   GA           C
 ||||   ||| |||||||||  ||   || |||   ||           A
 AUUG   CCG CUUCUGCUU  UC   CA CUU   CC           C
G    CUU   -         CU  UAC  C   -GA  UCAUUAGAGGA
Stem-loop sequence UUGACAAUGGCUGAAGAUGAAAUAGUAGUCGAAGAAGAGCAAUCACAGCCACAGGAGAUUACUCCAGUUCCACCAUCUUCUUCGUCUUCGCCUUCGUUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001344843.1
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  |*|||||=|||||||||||||
targets:4952   GACGAAGGCGAAGAAGAUGGU   4972

1.0 Arabidopsis thaliana WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein mRNA WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein(AT5G49430) coding protein psRNATarget
NM_124320.3
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  |*|||||=|||||||||||||
targets:4522   GACGAAGGCGAAGAAGAUGGU   4542

1.0 Arabidopsis thaliana WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein partial mRNA WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein(AT5G49430) coding protein psRNATarget
NM_001035610.2
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  |*||||||||||||*||||||
targets:809   GACGAAGACGAAGAUGAUGGU   829

1.5 Arabidopsis thaliana RING/U-box superfamily protein mRNA RING/U-box superfamily protein(AT3G13430) coding protein psRNATarget
NM_001338050.1
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  |*||||||||||||*||||||
targets:540   GACGAAGACGAAGAUGAUGGU   560

1.5 Arabidopsis thaliana RING/U-box superfamily protein mRNA RING/U-box superfamily protein(AT3G13430) coding protein psRNATarget
NM_112188.4
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  |*||||||||||||*||||||
targets:510   GACGAAGACGAAGAUGAUGGU   530

1.5 Arabidopsis thaliana RING/U-box superfamily protein mRNA RING/U-box superfamily protein(AT3G13430) coding protein psRNATarget
NM_001202950.1
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  |*||||||||||||*||||||
targets:524   GACGAAGACGAAGAUGAUGGU   544

1.5 Arabidopsis thaliana RING/U-box superfamily protein mRNA RING/U-box superfamily protein(AT3G13430) coding protein psRNATarget
BT010726.1
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  |*||||||||||||*||||||
targets:350   GACGAAGACGAAGAUGAUGGU   370

1.5 Arabidopsis thaliana At3g13430 mRNA, complete cds NA coding protein psRNATarget
BT011661.1
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  |*||||||||||||*||||||
targets:247   GACGAAGACGAAGAUGAUGGU   267

1.5 Arabidopsis thaliana At3g13430 mRNA, complete cds NA coding protein psRNATarget
NM_112647.4
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  **=|||||||||||||||||*
targets:832   UAUGAAGACGAAGAAGAUGGA   852

2.0 Arabidopsis thaliana ARF-GAP domain 15 (AGD15), mRNA ARF-GAP domain 15(AGD15) coding protein psRNATarget
NM_001338298.1
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  **=|||||||||||||||||*
targets:914   UAUGAAGACGAAGAAGAUGGA   934

2.0 Arabidopsis thaliana ARF-GAP domain 15 (AGD15), mRNA ARF-GAP domain 15(AGD15) coding protein psRNATarget
AK228639.1
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  **=|||||||||||||||||*
targets:832   UAUGAAGACGAAGAAGAUGGA   852

2.0 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-48-C10 NA coding protein psRNATarget
NM_001338299.1
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  **=|||||||||||||||||*
targets:802   UAUGAAGACGAAGAAGAUGGA   822

2.0 Arabidopsis thaliana ARF-GAP domain 15 (AGD15), mRNA ARF-GAP domain 15(AGD15) coding protein psRNATarget
NM_001338301.1
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  **=|||||||||||||||||*
targets:801   UAUGAAGACGAAGAAGAUGGA   821

2.0 Arabidopsis thaliana ARF-GAP domain 15 (AGD15), mRNA ARF-GAP domain 15(AGD15) coding protein psRNATarget
NM_128524.4
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  ***|||||||||||||||||*
targets:330   UAGGAAGACGAAGAAGAUGGA   350

2.0 Arabidopsis thaliana pleckstrin homologue 1 (PH1), mRNA pleckstrin homologue 1(PH1) coding protein psRNATarget
NM_001338799.1
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  ||||=||||||*|||||||||
targets:321   GGCGGAGACGACGAAGAUGGU   341

2.5 Arabidopsis thaliana O-fucosyltransferase family protein mRNA O-fucosyltransferase family protein(AT3G26370) coding protein psRNATarget
NM_113544.5
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  ||||=||||||*|||||||||
targets:321   GGCGGAGACGACGAAGAUGGU   341

2.5 Arabidopsis thaliana O-fucosyltransferase family protein mRNA O-fucosyltransferase family protein(AT3G26370) coding protein psRNATarget
BX823660.1
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  ||||=||||||*|||||||||
targets:257   GGCGGAGACGACGAAGAUGGU   277

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS63ZC08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AK226720.1
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  ||||=||||||*|||||||||
targets:213   GGCGGAGACGACGAAGAUGGU   233

2.5 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-68-F08 NA coding protein psRNATarget
KY906066.1
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  ||||=||||||*|||||||||
targets:115   GGCGGAGACGACGAAGAUGGU   135

2.5 Arabidopsis thaliana pectic arabinogalactan synthesis-related protein (AT3G26370.1) mRNA, partial cds NA coding protein psRNATarget
NM_100914.4
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  |*||||||=|||||||||||*
targets:3540   GACGAAGAUGAAGAAGAUGGA   3560

2.5 Arabidopsis thaliana Nucleoporin autopeptidase mRNA Nucleoporin autopeptidase(AT1G10390) coding protein psRNATarget
NM_001035941.2
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  |*||||||=|||||||||||*
targets:3441   GACGAAGAUGAAGAAGAUGGA   3461

2.5 Arabidopsis thaliana Nucleoporin autopeptidase mRNA Nucleoporin autopeptidase(AT1G10390) coding protein psRNATarget
AY078948.1
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  |*||||||=|||||||||||*
targets:3511   GACGAAGAUGAAGAAGAUGGA   3531

2.5 Arabidopsis thaliana At1g10390/F14N23_29 mRNA, complete cds NA coding protein psRNATarget
AK226964.1
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  |*||||||=|||||||||||*
targets:3445   GACGAAGAUGAAGAAGAUGGA   3465

2.5 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-34-M20 NA coding protein psRNATarget
NM_001331900.1
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  |*||||||=|||||||||||*
targets:3399   GACGAAGAUGAAGAAGAUGGA   3419

2.5 Arabidopsis thaliana Nucleoporin autopeptidase mRNA Nucleoporin autopeptidase(AT1G10390) coding protein psRNATarget
BT003030.1
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  |*||||||=|||||||||||*
targets:3100   GACGAAGAUGAAGAAGAUGGA   3120

2.5 Arabidopsis thaliana At1g10390/F14N23_29 gene, complete cds NA coding protein psRNATarget
NM_001341978.1
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  **|||||||||||||||||**
targets:340   CACGAAGACGAAGAAGAUGAG   360

2.5 Arabidopsis thaliana CRS1 / YhbY (CRM) domain-containing protein partial mRNA CRS1 / YhbY (CRM) domain-containing protein(AT4G29750) coding protein psRNATarget
NM_119121.3
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  **|||||||||||||||||**
targets:403   CACGAAGACGAAGAAGAUGAG   423

2.5 Arabidopsis thaliana CRS1 / YhbY (CRM) domain-containing protein mRNA CRS1 / YhbY (CRM) domain-containing protein(AT4G29750) coding protein psRNATarget
NM_121356.3
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  |*|||*||=||||||||||||
targets:705   GACGACGAUGAAGAAGAUGGU   725

2.5 Arabidopsis thaliana protein kinases;ubiquitin-protein ligase (KEG), mRNA protein kinases;ubiquitin-protein ligase(KEG) coding protein psRNATarget
NM_001203374.1
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  |*|||*||=||||||||||||
targets:381   GACGACGAUGAAGAAGAUGGU   401

2.5 Arabidopsis thaliana protein kinases;ubiquitin-protein ligase (KEG), mRNA protein kinases;ubiquitin-protein ligase(KEG) coding protein psRNATarget
DQ315360.1
ncRNA:21   CCGCUUCUGCUUCUUCUACCA   1
  |*|||*||=||||||||||||
targets:289   GACGACGAUGAAGAAGAUGGU   309

2.5 Arabidopsis thaliana RING E3 ligase protein mRNA, complete cds NA coding protein psRNATarget
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