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BaseInfo

ncRNA ID novel_zma_miR10727
Species Zea mays
Class miRNA
Genome position Chr3:108803252-108803327 [-]
Reference genome RefGen_v4
Source SRR5100248
Length 24
Mature sequence(if miRNA) 1 - GCUGUUGUUGGCCUAGAGUAGUCG - 24
Stem-loop(if miRNA) --U  U    -     C UG     -     AG   U  A
   CU CUCU GGCCA A  GCGGC CCCGG  CCG CC C
   || |||| ||||| |  ||||| |||||  ||| ||
   GA GAGA CCGGU U  UGUCG GGGCU  GGU GG G
GCU  U    U     - GU     U     GG   -  U
Stem-loop sequence UCUUCUCUGGCCACAUGGCGGCCCCGGAGCCGUCCACGUGGUGGGGUCGGGUGCUGUUGUUGGCCUAGAGUAGUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008645724.2
ncRNA:24   GCUGAUGAGAUCCGGUUGUUGUCG   1
  ||||||||||=|||||=|||||||
targets:22   CGACUACUCUGGGCCAGCAACAGC   45

2.5 PREDICTED: Zea mays Pentatricopeptide repeat-containing protein (LOC100381630), transcript variant X1, mRNA NA coding protein psRNATarget