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BaseInfo

ncRNA ID novel_zma_miR10723
Species Zea mays
Class miRNA
Genome position Chr3:114617575-114617754 [-]
Reference genome RefGen_v4
Source SRR5100248
Length 24
Mature sequence(if miRNA) 157 - GGGGCUGUUUGGUUUCUAGGGACU - 180
Stem-loop(if miRNA) --    C          C          U            -                  CCC      AC      UA          C
  GGGG UGUUUGGUUU UAGGGACUAA UUUUAGUCCCUC AUUUUAUUCUAUUUUAGU   UAAAUU  UAAAUA  GAAACUAAAA U
  |||| |||||||||| |||||||||| |||||||||||| ||||||||||||||||||   ||||||  ||||||  |||||||||| C
  CCCC ACAAACCAAA AUCCCUGAUU GAAAUCAGGGAG UGAAAUAAGGUAAAAUUA   AUUUAA  AUUUAU  CUUUGAUUUU U
AU    C          U          U            G                  AAU      CA      CC          A
Stem-loop sequence GGGGCUGUUUGGUUUCUAGGGACUAAUUUUUAGUCCCUCAUUUUAUUCUAUUUUAGUCCCUAAAUUACUAAAUAUAGAAACUAAAACUCUAUUUUAGUUUCCCUAUUUAACAAUUUAUAAAUUAAAAUGGAAUAAAGUGGAGGGACUAAAGUUUAGUCCCUAUAAACCAAACACCCCCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020543841.1
ncRNA:24   UCAGGGAUCUUUGGUUUGUCGGGG   1
  |||||||||||||||||||*||||
targets:1070   AGUCCCUAGAAACCAAACACCCCC   1093

1.5 PREDICTED: Zea mays lo1 pI allergen homolog 1 (lop1), transcript variant X1, mRNA NA coding protein psRNATarget
BT065747.2
ncRNA:24   UCAGGGAUCUUUGGUUUGUCGGGG   1
  |||||||||||||||||||*||||
targets:915   AGUCCCUAGAAACCAAACACCCCC   938

1.5 Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds NA coding protein psRNATarget
XM_008674147.2
ncRNA:24   UCAGGGAUCUUUGGUUUGUCGGGG   1
  |||||||||||||||||||*||||
targets:28   AGUCCCUAGAAACCAAACACCCCC   51

1.5 PREDICTED: Zea mays uncharacterized LOC100272682 (TIDP2766), transcript variant X8, mRNA NA coding protein psRNATarget
NM_001152323.1
ncRNA:24   UCAGGGAUCUUUGGUUUGUCGGGG   1
  |||||||||||||||||||*||||
targets:2085   AGUCCCUAGAAACCAAACACCCCC   2108

1.5 Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA NA coding protein psRNATarget
BT053999.2
ncRNA:24   UCAGGGAUCUUUGGUUUGUCGGGG   1
  |||||||||||||||||||*||||
targets:2085   AGUCCCUAGAAACCAAACACCCCC   2108

1.5 Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds NA coding protein psRNATarget
BT055601.1
ncRNA:24   UCAGGGAUCUUUGGUUUGUCGGGG   1
  ||||=||||||||||||||*||||
targets:938   AGUCUCUAGAAACCAAACACCCCC   961

1.5 Zea mays full-length cDNA clone ZM_BFc0063A22 mRNA, complete cds NA coding protein psRNATarget
NM_001153051.1
ncRNA:24   UCAGGGAUCUUUGGUUUGUCGGGG   1
  ||||=||||||||||||||*||||
targets:938   AGUCUCUAGAAACCAAACACCCCC   961

1.5 Zea mays NAD(P)-binding Rossmann-fold superfamily protein (LOC100280114), mRNA NA coding protein psRNATarget
XM_020553397.1
ncRNA:24   UCAGGGAUCUUUGGUUUGUCGGGG   1
  ||||||||*||||||||||*||||
targets:703   AGUCCCUACAAACCAAACACCCCC   726

2.5 PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008680551.2
ncRNA:24   UCAGGGAUCUUUGGUUUGUCGGGG   1
  ||||*||||||||||||||*||||
targets:962   AGUCACUAGAAACCAAACACCCCC   985

1.5 PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542840.1
ncRNA:24   UCAGGGAUCUUUGGUUUGUCGGGG   1
  ||||||||*||||||||||*||||
targets:1123   AGUCCCUACAAACCAAACACCCCC   1146

2.5 PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674294.2
ncRNA:24   UCAGGGAUCUUUGGUUUGUCGGGG   1
  ||||||||*||||||||||*||||
targets:21   AGUCCCUAAAAACCAAACACCCCC   44

2.5 PREDICTED: Zea mays OSJNBa0059D20.8-like protein (LOC100274149), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674295.2
ncRNA:24   UCAGGGAUCUUUGGUUUGUCGGGG   1
  ||||||||*||||||||||*||||
targets:21   AGUCCCUAAAAACCAAACACCCCC   44

2.5 PREDICTED: Zea mays OSJNBa0059D20.8-like protein (LOC100274149), transcript variant X2, mRNA NA coding protein psRNATarget
BT085047.1
ncRNA:24   UCAGGGAUCUUUGGUUUGUCGGGG   1
  ||||||||*||||||||||*||||
targets:1344   AGUCCCUAUAAACCAAACACCCCC   1367

2.5 Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds NA coding protein psRNATarget
XM_008676281.2
ncRNA:24   UCAGGGAUCUUUGGUUUGUCGGGG   1
  ||||||||*||||||||||*||||
targets:43   AGUCCCUACAAACCAAACACCCCC   66

2.5 PREDICTED: Zea mays U-box domain-containing protein 14 (LOC103650716), mRNA NA coding protein psRNATarget
XM_020547858.1
ncRNA:24   UCAGGGAUCUUUGGUUUGUCGGGG   1
  ||||*||||||||||||||*||||
targets:1692   AGUCACUAGAAACCAAACACCCCC   1715

1.5 PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA NA coding protein psRNATarget
BT036582.1
ncRNA:24   UCAGGGAUCUUUGGUUUGUCGGGG   1
  ||||=||*|||||||||||*||||
targets:966   AGUCUCUUGAAACCAAACACCCCC   989

2.5 Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds NA coding protein psRNATarget
NM_001139183.1
ncRNA:24   UCAGGGAUCUUUGGUUUGUCGGGG   1
  ||||=||*|||||||||||*||||
targets:966   AGUCUCUUGAAACCAAACACCCCC   989

2.5 Zea mays hypothetical protein (LOC100194130), mRNA NA coding protein psRNATarget
EU957896.1
ncRNA:24   UCAGGGAUCUUUGGUUUGUCGGGG   1
  ||||*=|||||||||||||*||||
targets:1394   AGUCGUUAGAAACCAAACACCCCC   1417

2.5 Zea mays clone 1630391 mRNA sequence NA coding protein psRNATarget
EZ052038.1
ncRNA:24   UCAGGGAUCUUUGGUUUGUCGGGG   1
  |*||||||*||||||||||*||||
targets:325   AAUCCCUAUAAACCAAACAUCCCC   348

2.5 TSA: Zea mays contig53158, mRNA sequence NA coding protein psRNATarget
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