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BaseInfo

ncRNA ID	novel_zma_miR10717
Species	Zea mays
Class	miRNA
Genome position	Chr3:131837874-131837964 [-]
Reference genome	RefGen_v4
Source	SRR5100248
Length	23
Mature sequence(if miRNA)	1 - UGGGAAAAUGUAGUUUCCAAACU - 23
Stem-loop(if miRNA)	--    AG   C           -------     --UUU   U     C   UUUG  AAC AUAUUUUCCUA       AGAAA     CUA UUUCC A   ||||  ||| |||||||||||       |||||     ||| |||||   AAAC  UUG UGUAAAAGGGU       UCUUU     GAU AAAGG A UC    CU   A           ACCCUAA     UAUUU   U     U
Stem-loop sequence	UUUGAGAACCAUAUUUUCCUAAGAAAUUUCUAUUUUCCCAAUGGAAAUUAGUUUAUUUUCUAAUCCCAUGGGAAAAUGUAGUUUCCAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU969814.1	ncRNA:23   UCAAACCUUUGAUGUAAAAGGGU   1   |||||||=|||||||||||=||| targets:1233   AGUUUGGGAACUACAUUUUUCCA   1255 Target Full Sequence	2.5	Zea mays clone 336004 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
LQ238393.1	ncRNA:23   UCAAACCUUUGAUGUAAAAGGGU   1   =*|||||||||*||||||||||| targets:16   GAUUUGGAAACCACAUUUUCCCA   38 Target Full Sequence	1.5	Sequence 4388 from Patent EP2985353	NA	coding protein	psRNATarget
HI406263.1	ncRNA:23   UCAAACCUUUGAUGUAAAAGGGU   1   =*|||||||||*||||||||||| targets:16   GAUUUGGAAACCACAUUUUCCCA   38 Target Full Sequence	1.5	Sequence 4388 from Patent EP2074227	NA	coding protein	psRNATarget
JB166724.1	ncRNA:23   UCAAACCUUUGAUGUAAAAGGGU   1   =*|||||||||*||||||||||| targets:16   GAUUUGGAAACCACAUUUUCCCA   38 Target Full Sequence	1.5	Sequence 4388 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008665063.2	ncRNA:23   UCAAACCUUUGAUGUAAAAGGGU   1   |*||||||||||*|||||||||= targets:3872   AAUUUGGAAACUCCAUUUUCCCG   3894 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008665062.2	ncRNA:23   UCAAACCUUUGAUGUAAAAGGGU   1   |*||||||||||*|||||||||= targets:3846   AAUUUGGAAACUCCAUUUUCCCG   3868 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008665066.2	ncRNA:23   UCAAACCUUUGAUGUAAAAGGGU   1   |*||||||||||*|||||||||= targets:3740   AAUUUGGAAACUCCAUUUUCCCG   3762 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008665064.2	ncRNA:23   UCAAACCUUUGAUGUAAAAGGGU   1   |*||||||||||*|||||||||= targets:3711   AAUUUGGAAACUCCAUUUUCCCG   3733 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008665068.2	ncRNA:23   UCAAACCUUUGAUGUAAAAGGGU   1   |*||||||||||*|||||||||= targets:3694   AAUUUGGAAACUCCAUUUUCCCG   3716 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008665065.2	ncRNA:23   UCAAACCUUUGAUGUAAAAGGGU   1   |*||||||||||*|||||||||= targets:3685   AAUUUGGAAACUCCAUUUUCCCG   3707 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008665067.2	ncRNA:23   UCAAACCUUUGAUGUAAAAGGGU   1   |*||||||||||*|||||||||= targets:3668   AAUUUGGAAACUCCAUUUUCCCG   3690 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020545579.1	ncRNA:23   UCAAACCUUUGAUGUAAAAGGGU   1   |*||||||||||*|||||||||= targets:3579   AAUUUGGAAACUCCAUUUUCCCG   3601 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008665071.2	ncRNA:23   UCAAACCUUUGAUGUAAAAGGGU   1   |*||||||||||*|||||||||= targets:3562   AAUUUGGAAACUCCAUUUUCCCG   3584 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X9, mRNA	NA	coding protein	psRNATarget