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BaseInfo

ncRNA ID	novel_zma_miR10659
Species	Zea mays
Class	miRNA
Genome position	Chr3:69695300-69695432 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	23
Mature sequence(if miRNA)	1 - AAGGCCUGUUUGGUUUGAUGCCU - 23
Stem-loop(if miRNA)	--    -C            A  C    -CU                ACUUUUUUGCCUA         C   A   AAGG  CUGUUUGGUUUG UG CUAA   UGCCACACUUUGCCUA             AGGUUAGUU UUC A   ||||  |||||||||||| || ||||   ||||||||||||||||             ||||||||| ||| U   UUCC  GAUAAACCAAGC AC GAUU   ACGGUGUGAAACGGAU             UCCAAUCAG AAG U AA    CC            -  C    UAC                -------------         C   C
Stem-loop sequence	AAGGCCUGUUUGGUUUGAUGCCUAACUUGCCACACUUUGCCUAACUUUUUUGCCUAAGGUUAGUUCUUCAAUUCGAACGACUAACCUUAGGCAAAGUGUGGCACAUUUAGCCACGAACCAAAUAGCCCCUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403195.1	ncRNA:23   UCCGUAGUUUGGUUUGUCCGGAA   1   |||||||||*|||||||||||*| targets:108   AGGCAUCAAUCCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1320 from Patent EP2074227	NA	coding protein	psRNATarget
HI403377.1	ncRNA:23   UCCGUAGUUUGGUUUGUCCGGAA   1   |||||*|||||||||||||||*| targets:108   AGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1502 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235325.1	ncRNA:23   UCCGUAGUUUGGUUUGUCCGGAA   1   |||||||||*|||||||||||*| targets:108   AGGCAUCAAUCCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1320 from Patent EP2985353	NA	coding protein	psRNATarget
HI403436.1	ncRNA:23   UCCGUAGUUUGGUUUGUCCGGAA   1   |||||*|||||||||||||||*| targets:108   AGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1561 from Patent EP2074227	NA	coding protein	psRNATarget
JB163897.1	ncRNA:23   UCCGUAGUUUGGUUUGUCCGGAA   1   |||||*|||||||||||||||*| targets:108   AGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1561 from Patent EP2559767	NA	coding protein	psRNATarget
JB163656.1	ncRNA:23   UCCGUAGUUUGGUUUGUCCGGAA   1   |||||||||*|||||||||||*| targets:108   AGGCAUCAAUCCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1320 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235507.1	ncRNA:23   UCCGUAGUUUGGUUUGUCCGGAA   1   |||||*|||||||||||||||*| targets:108   AGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1502 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235566.1	ncRNA:23   UCCGUAGUUUGGUUUGUCCGGAA   1   |||||*|||||||||||||||*| targets:108   AGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1561 from Patent EP2985353	NA	coding protein	psRNATarget
JB163838.1	ncRNA:23   UCCGUAGUUUGGUUUGUCCGGAA   1   |||||*|||||||||||||||*| targets:108   AGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1502 from Patent EP2559767	NA	coding protein	psRNATarget
EZ052567.1	ncRNA:23   UCCGUAGUUUGGUUUGUCCGGAA   1   |*|||*||||||||||||||||* targets:577   AUGCAGCAAACCAAACAGGCCUA   599 Target Full Sequence	2.0	TSA: Zea mays contig53688, mRNA sequence	NA	coding protein	psRNATarget
XM_008665407.2	ncRNA:23   UCCGUAGUUUGGUUUGUCCGGAA   1   ***=|||*||||||||||||||| targets:3403   UCAUAUCUAACCAAACAGGCCUU   3425 Target Full Sequence	1.0	PREDICTED: Zea mays Putative SNF2-domain/RING finger domain/helicase domain protein (LOC103642087), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008665409.2	ncRNA:23   UCCGUAGUUUGGUUUGUCCGGAA   1   ***=|||*||||||||||||||| targets:3424   UCAUAUCUAACCAAACAGGCCUU   3446 Target Full Sequence	1.0	PREDICTED: Zea mays Putative SNF2-domain/RING finger domain/helicase domain protein (LOC103642087), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT068192.1	ncRNA:23   UCCGUAGUUUGGUUUGUCCGGAA   1   ||*=|*|=||||||||||||||* targets:1199   AGAUAACGAACCAAACAGGCCUG   1221 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0086C23 mRNA, complete cds	NA	coding protein	psRNATarget