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BaseInfo

ncRNA ID	novel_zma_miR10657
Species	Zea mays
Class	miRNA
Genome position	Chr2:589434-589492 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	24
Mature sequence(if miRNA)	1 - GGCACUCGGCAAAGAACCUGACAA - 24
Stem-loop(if miRNA)	--                C   ACAAA  GU   GGCACUCGGCAAAGAA CUG     GG  C   |||||||||||||||| |||     ||   UCGUGAGCCGUUUCUU GGC     CC  U GG                A   ---AG  GC
Stem-loop sequence	GGCACUCGGCAAAGAACCUGACAAAGGGUCUCGCCGACGGAUUCUUUGCCGAGUGCUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ241915.1	ncRNA:24   AACAGUCCAAGAAACGGCUCACGG   1   *|||*||||||||||||||||||= targets:74   AUGUGAGGUUCUUUGCCGAGUGCU   97 Target Full Sequence	1.0	Sequence 7910 from Patent EP2985353	NA	coding protein	psRNATarget
HI409785.1	ncRNA:24   AACAGUCCAAGAAACGGCUCACGG   1   *|||*||||||||||||||||||= targets:74   AUGUGAGGUUCUUUGCCGAGUGCU   97 Target Full Sequence	1.0	Sequence 7910 from Patent EP2074227	NA	coding protein	psRNATarget
JB170246.1	ncRNA:24   AACAGUCCAAGAAACGGCUCACGG   1   *|||*||||||||||||||||||= targets:74   AUGUGAGGUUCUUUGCCGAGUGCU   97 Target Full Sequence	1.0	Sequence 7910 from Patent EP2559767	NA	coding protein	psRNATarget
EZ087925.1	ncRNA:24   AACAGUCCAAGAAACGGCUCACGG   1   *|||==|*|||||||||||||||| targets:46   GUGUUGGCUUCUUUGCCGAGUGCC   69 Target Full Sequence	2.0	TSA: Zea mays contig23571, mRNA sequence	NA	coding protein	psRNATarget
BT067215.1	ncRNA:24   AACAGUCCAAGAAACGGCUCACGG   1   *|||==|*|||||||||||||||| targets:1145   GUGUUGGCUUCUUUGCCGAGUGCC   1168 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
BT064046.1	ncRNA:24   AACAGUCCAAGAAACGGCUCACGG   1   *|||==|*|||||||||||||||| targets:1282   GUGUUGGCUUCUUUGCCGAGUGCC   1305 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:24   AACAGUCCAAGAAACGGCUCACGG   1   *|||==|*|||||||||||||||| targets:1282   GUGUUGGCUUCUUUGCCGAGUGCC   1305 Target Full Sequence	2.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
HI408565.1	ncRNA:22   CAGUCCAAGAAACGGCUCACGG   1   *|=|||||||||||||||||== targets:1   CUUAGGUUCUUUGCCGAGUGUU   22 Target Full Sequence	2.5	Sequence 6690 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240695.1	ncRNA:22   CAGUCCAAGAAACGGCUCACGG   1   *|=|||||||||||||||||== targets:1   CUUAGGUUCUUUGCCGAGUGUU   22 Target Full Sequence	2.5	Sequence 6690 from Patent EP2985353	NA	coding protein	psRNATarget
JB169026.1	ncRNA:22   CAGUCCAAGAAACGGCUCACGG   1   *|=|||||||||||||||||== targets:1   CUUAGGUUCUUUGCCGAGUGUU   22 Target Full Sequence	2.5	Sequence 6690 from Patent EP2559767	NA	coding protein	psRNATarget
JB167100.1	ncRNA:24   AACAGUCCAAGAAACGGCUCACGG   1   *|||||*||*|||||||||||||= targets:120   AUGUCAUGUACUUUGCCGAGUGCU   143 Target Full Sequence	3.0	Sequence 4764 from Patent EP2559767	NA	coding protein	psRNATarget
HI406639.1	ncRNA:24   AACAGUCCAAGAAACGGCUCACGG   1   *|||||*||*|||||||||||||= targets:120   AUGUCAUGUACUUUGCCGAGUGCU   143 Target Full Sequence	3.0	Sequence 4764 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238769.1	ncRNA:24   AACAGUCCAAGAAACGGCUCACGG   1   *|||||*||*|||||||||||||= targets:120   AUGUCAUGUACUUUGCCGAGUGCU   143 Target Full Sequence	3.0	Sequence 4764 from Patent EP2985353	NA	coding protein	psRNATarget
JB167146.1	ncRNA:24   AACA-GUCCAAGAAACGGCUCACGG   1   **||-=|||||||||||||||||=* targets:37   CGGUAUAGGUUCUUUGCCGAGUGUA   61 Target Full Sequence	2.5	Sequence 4810 from Patent EP2559767	NA	coding protein	psRNATarget
HI406685.1	ncRNA:24   AACA-GUCCAAGAAACGGCUCACGG   1   **||-=|||||||||||||||||=* targets:37   CGGUAUAGGUUCUUUGCCGAGUGUA   61 Target Full Sequence	2.5	Sequence 4810 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238815.1	ncRNA:24   AACA-GUCCAAGAAACGGCUCACGG   1   **||-=|||||||||||||||||=* targets:37   CGGUAUAGGUUCUUUGCCGAGUGUA   61 Target Full Sequence	2.5	Sequence 4810 from Patent EP2985353	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   AACA-GUCCAAGAAACGGCUCACGG   1   **||-=|||||||||||||||||=* targets:174   CGGUAUAGGUUCUUUGCCGAGUGUA   198 Target Full Sequence	2.5	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   AACAGUCC-AAGAAACGGCUCACGG   1   *****|||-|||||||||||||||| targets:10   CAAAGAGGCUUCUUUGCCGAGUGCC   34 Target Full Sequence	2.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
HI406962.1	ncRNA:24   AACA-GUCCAAGAAACGGCUCACGG   1   **||-=|||||||||||||||||=* targets:174   CGGUAUAGGUUCUUUGCCGAGUGUA   198 Target Full Sequence	2.5	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
HI406962.1	ncRNA:24   AACAGUCC-AAGAAACGGCUCACGG   1   *****|||-|||||||||||||||| targets:10   CAAAGAGGCUUCUUUGCCGAGUGCC   34 Target Full Sequence	2.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   AACA-GUCCAAGAAACGGCUCACGG   1   **||-=|||||||||||||||||=* targets:174   CGGUAUAGGUUCUUUGCCGAGUGUA   198 Target Full Sequence	2.5	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   AACAGUCC-AAGAAACGGCUCACGG   1   *****|||-|||||||||||||||| targets:10   CAAAGAGGCUUCUUUGCCGAGUGCC   34 Target Full Sequence	2.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
LQ239198.1	ncRNA:24   AACAGUCCAAGAAACGGCUCACGG   1   *||*|=|*|||||||||||||||= targets:42   CUGGCGGAUUCUUUGCCGAGUGCU   65 Target Full Sequence	3.0	Sequence 5193 from Patent EP2985353	NA	coding protein	psRNATarget
HI407068.1	ncRNA:24   AACAGUCCAAGAAACGGCUCACGG   1   *||*|=|*|||||||||||||||= targets:42   CUGGCGGAUUCUUUGCCGAGUGCU   65 Target Full Sequence	3.0	Sequence 5193 from Patent EP2074227	NA	coding protein	psRNATarget
JB167529.1	ncRNA:24   AACAGUCCAAGAAACGGCUCACGG   1   *||*|=|*|||||||||||||||= targets:42   CUGGCGGAUUCUUUGCCGAGUGCU   65 Target Full Sequence	3.0	Sequence 5193 from Patent EP2559767	NA	coding protein	psRNATarget
EU962802.1	ncRNA:24   AACAGUCC-AAGAAACGGCUCACGG   1   *****|||-|||||||||||||||| targets:1093   CAAAGAGGCUUCUUUGCCGAGUGCC   1117 Target Full Sequence	2.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU962802.1	ncRNA:24   AACAGUCCAAGAAACGGCUCACGG   1   ***||*||**|||||||||||||| targets:819   GAAUCCGGGACUUUGCCGAGUGCC   842 Target Full Sequence	3.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
JB167233.1	ncRNA:24   AACAGUCCAAGAAACGGCUCACGG   1   **|*|||***|||||||||||||| targets:1   GCGACAGAGACUUUGCCGAGUGCC   24 Target Full Sequence	3.0	Sequence 4897 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238902.1	ncRNA:24   AACAGUCCAAGAAACGGCUCACGG   1   **|*|||***|||||||||||||| targets:1   GCGACAGAGACUUUGCCGAGUGCC   24 Target Full Sequence	3.0	Sequence 4897 from Patent EP2985353	NA	coding protein	psRNATarget
HI406772.1	ncRNA:24   AACAGUCCAAGAAACGGCUCACGG   1   **|*|||***|||||||||||||| targets:1   GCGACAGAGACUUUGCCGAGUGCC   24 Target Full Sequence	3.0	Sequence 4897 from Patent EP2074227	NA	coding protein	psRNATarget