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BaseInfo

ncRNA ID	novel_zma_miR10651
Species	Zea mays
Class	miRNA
Genome position	Chr2:17842614-17842691 [-]
Reference genome	RefGen_v4
Source	SRR5100248
Length	21
Mature sequence(if miRNA)	58 - UAUUGGAGUGUAUUGAGUGGG - 78
Stem-loop(if miRNA)	UAUUGGAG       A           AU  AUUUUGACUUG         UGUAUUG GUGGGAUUGAG  GU           U         ||||||| |||||||||||  ||           U         ACAUAAC CACCCUAAUUC  GC           A --------       C           -G  CAAAUUUAGGU
Stem-loop sequence	UAUUGGAGUGUAUUGAGUGGGAUUGAGAUGUAUUUUGACUUGUUAUGGAUUUAAACCGGCUUAAUCCCACCCAAUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008668946.2	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   ||||||||||||||||||||| targets:2357   CCCACUCAAUACACUCCAAUA   2377 Target Full Sequence	0.0	PREDICTED: Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT035580.1	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   ||||||||||||||||||||| targets:1245   CCCACUCAAUACACUCCAAUA   1265 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0070I12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138477.1	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   ||||||||||||||||||||| targets:1245   CCCACUCAAUACACUCCAAUA   1265 Target Full Sequence	0.0	Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), mRNA	NA	coding protein	psRNATarget
EU941886.1	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   ||||||||||||||||||||| targets:147   CCCACUCAAUACACUCCAAUA   167 Target Full Sequence	0.0	Zea mays clone 1471521 mRNA sequence	NA	coding protein	psRNATarget
LQ240934.1	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   |||||*||||||||||||||| targets:67   CCCACCCAAUACACUCCAAUA   87 Target Full Sequence	1.0	Sequence 6929 from Patent EP2985353	NA	coding protein	psRNATarget
HI408804.1	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   |||||*||||||||||||||| targets:67   CCCACCCAAUACACUCCAAUA   87 Target Full Sequence	1.0	Sequence 6929 from Patent EP2074227	NA	coding protein	psRNATarget
JB169265.1	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   |||||*||||||||||||||| targets:67   CCCACCCAAUACACUCCAAUA   87 Target Full Sequence	1.0	Sequence 6929 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008660051.2	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   ||||=*||||||||||||||| targets:1592   CCCAUCCAAUACACUCCAAUA   1612 Target Full Sequence	2.0	PREDICTED: Zea mays putative MADS-box transcription factor family protein (MADS71), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT062534.2	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   |||||*=|||||||||||||| targets:71   CCCACCUAAUACACUCCAAUA   91 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0310N08 mRNA, complete cds	NA	coding protein	psRNATarget
AY112306.1	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   |||||*=|||||||||||||| targets:108   CCCACCUAAUACACUCCAAUA   128 Target Full Sequence	2.0	Zea mays CL30631_-1 mRNA sequence	NA	coding protein	psRNATarget
XM_008649520.2	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   ||||||||||*|||||||||* targets:893   CCCACUCAAUCCACUCCAAUC   913 Target Full Sequence	2.5	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008649521.2	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   ||||||||||*|||||||||* targets:864   CCCACUCAAUCCACUCCAAUC   884 Target Full Sequence	2.5	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT055408.1	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   ||||||||||*|||||||||* targets:812   CCCACUCAAUCCACUCCAAUC   832 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0147G07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152975.1	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   ||||||||||*|||||||||* targets:812   CCCACUCAAUCCACUCCAAUC   832 Target Full Sequence	2.5	Zea mays glycosyltransferase family protein 28 (IDP1988), mRNA	NA	coding protein	psRNATarget
JB167414.1	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   ||||||||||*|||||||||* targets:6   CCCACUCAAUCCACUCCAAUC   26 Target Full Sequence	2.5	Sequence 5078 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239083.1	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   ||||||||||*|||||||||* targets:6   CCCACUCAAUCCACUCCAAUC   26 Target Full Sequence	2.5	Sequence 5078 from Patent EP2985353	NA	coding protein	psRNATarget
HI406953.1	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   ||||||||||*|||||||||* targets:6   CCCACUCAAUCCACUCCAAUC   26 Target Full Sequence	2.5	Sequence 5078 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008681684.2	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   |=|||*|||||||||=||||| targets:2884   CUCACCCAAUACACUUCAAUA   2904 Target Full Sequence	2.5	PREDICTED: Zea mays pyrophosphate-energized vacuolar membrane proton pump (LOC103654862), mRNA	NA	coding protein	psRNATarget
HI406890.1	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   |=|||*|||||||||=||||| targets:100   CUCACCCAAUACACUUCAAUA   120 Target Full Sequence	2.5	Sequence 5015 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239020.1	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   |=|||*|||||||||=||||| targets:100   CUCACCCAAUACACUUCAAUA   120 Target Full Sequence	2.5	Sequence 5015 from Patent EP2985353	NA	coding protein	psRNATarget
JB167351.1	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   |=|||*|||||||||=||||| targets:100   CUCACCCAAUACACUUCAAUA   120 Target Full Sequence	2.5	Sequence 5015 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008661559.2	ncRNA:21   GGGUGAGUUAUGUGAGGUUAU   1   *|=*|||*||||||||||||| targets:765   GCUUCUCCAUACACUCCAAUA   785 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103638725 (LOC103638725), mRNA	NA	coding protein	psRNATarget