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BaseInfo

ncRNA ID osa-miRf10662-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - CGAUGGAGUGGCACUGUUCC - NA
Stem-loop(if miRNA)          A   C             A        G  AAAAA  --   GUUAGCCUCAACUACACGUGGGGAAGAAAGAAG
GGGAAAUUG AAC GUGCCACUCCGUC CGUUUUUU UC     UC  UCU                                 A
||||||||| ||| ||||||||||||| |||||||| ||     ||  |||                                 G
CCUUUUAAC UUG CACGGUGAGGUAG GCAAAAGG AG     UC  GGG                                 A
         C   U             C        G  -----  UG   AUCUAUACCCUGGGUGUACAAUCAAGGUAGGAG
Stem-loop sequence GGGAAAUUGAAACCGUGCCACUCCGUCACGUUUUUUGUCAAAAAUCUCUGUUAGCCUCAACUACACGUGGGGAAGAAAGAAGAGAGAGGAUGGAACUAACAUGUGGGUCCCAUAUCUAGGGGUCUGAGGGAAAACGCGAUGGAGUGGCACUGUUCCAAUUUUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015787049.1
ncRNA:20   CCUUGUCACGGUGAGGUAGC   1
  |||||*|||||||||||||*
targets:138   GGAACCGUGCCACUCCAUCA   157

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271417 (LOC9271417), mRNA uncharacterized LOC9271417(LOC9271417) coding protein psRNATarget
EF576082.1
ncRNA:20   CCUUGUCACGGUGAGGUAGC   1
  |||*|||*||||||||||||
targets:562   GGAUCAGAGCCACUCCAUCG   581

2.5 Oryza sativa (indica cultivar-group) clone 3-2-C10 serine/threonine-protein kinase receptor precursor, mRNA, partial cds NA coding protein psRNATarget
AK102758.1
ncRNA:20   CCUUGUCACGGUGAGGUAGC   1
  |||*|||*||||||||||||
targets:2646   GGAUCAGAGCCACUCCAUCG   2665

2.5 Oryza sativa Japonica Group cDNA clone:J033107C10, full insert sequence NA coding protein psRNATarget
XM_015791187.1
ncRNA:20   CCUUGUCACGGUGAGGUAGC   1
  |||*|||*||||||||||||
targets:2659   GGAUCAGAGCCACUCCAUCG   2678

2.5 PREDICTED: Oryza sativa Japonica Group G-type lectin S-receptor-like serine/threonine-protein kinase B120 (LOC4343549), transcript variant X1, mRNA G-type lectin S-receptor-like serine/threonine-protein kinase B120(LOC4343549) coding protein psRNATarget