Search result

BaseInfo

ncRNA ID	novel_zma_miR10641
Species	Zea mays
Class	miRNA
Genome position	Chr7:16445486-16445712 [+]
Reference genome	RefGen_v4
Source	SRR1997865
Length	24
Mature sequence(if miRNA)	204 - AUGAUAUCAUGACACGUAGACAAG - 227
Stem-loop(if miRNA)	--    C                                      A  GAAAAA    C      ACUA   C            C            UCG    -     - U   UGUC ACGUGUCAUGAUAUCAUAUGUACAGGCUGUGAUAAAAA UU      GUUU GAGAAA    UGA GCGCUAUGUGUA AAACCUAAGAGA   ACAU UGAAA C C   |||| |||||||||||||||||||||||||||||||||||||| ||      |||| ||||||    ||| |||||||||||| ||||||||||||   |||| ||||| | U   ACAG UGCACAGUACUAUAGUAUACAUGUCCGACACUAUUUUU AA      CAAA UUCUUU    ACU UGUGAUACACAU UUUGGAUUCUCU   UGUG ACUUU G A GA    A                                      A  AUCUUA    C      CAAC   C            C            UGA    U     A U
Stem-loop sequence	UGUCCACGUGUCAUGAUAUCAUAUGUACAGGCUGUGAUAAAAAAUUGAAAAAGUUUCGAGAAAACUAUGACGCGCUAUGUGUACAAACCUAAGAGAUCGACAUUGAAACUCUAUGAUUUCAUGUGUAGUUCUCUUAGGUUUCUACACAUAGUGUCUCACAACUUUCUUCAAACAUUCUAAAAUUUUUAUCACAGCCUGUACAUAUGAUAUCAUGACACGUAGACAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163681.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   ||||||*||||||||||||||||| targets:7   CUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235350.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   ||||||*||||||||||||||||| targets:7   CUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget
HI403220.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   ||||||*||||||||||||||||| targets:7   CUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
HI403209.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   =|||||*||||||||||||||||| targets:7   UUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1334 from Patent EP2074227	NA	coding protein	psRNATarget
JB163670.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   =|||||*||||||||||||||||| targets:7   UUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1334 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235339.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   =|||||*||||||||||||||||| targets:7   UUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1334 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   |||*||*||||||||||||||||| targets:7   CUUCUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
JB163683.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   |||*||*||||||||||||||||| targets:7   CUUCUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
HI403222.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   |||*||*||||||||||||||||| targets:7   CUUCUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget