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BaseInfo

ncRNA ID	osa-miRf10660-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	25
Mature sequence(if miRNA)	NA - UGGGUUUCCGUGUCCAACGUUUGAC - NA
Stem-loop(if miRNA)	C   UUA  UAAAAUUUUUUUUAUAAUUAGUAUUUUUAUUGUUGUUAGAUGAUAAAA AGAUAAAUCCUGGGUUUCCGUGUCCAACGUUUGACUGUC GUC   UA                                                C ||||||||||||||||||||||||||||||||||||||| |||   || UCUGUUUGGGACUCAAAGGCACAGGUUGCAAACUGGCAG AUA   AA                                                A                                        A   ---  CUUUUUUUAUACUUUUUUUUUCUAUUCAGUGCGUAUUUCAUAAUUAGU
Stem-loop sequence	AGAUAAAUCCUGGGUUUCCGUGUCCAACGUUUGACUGUCCGUCUUAUAUAAAAUUUUUUUUAUAAUUAGUAUUUUUAUUGUUGUUAGAUGAUAAAACAUGAUUAAUACUUUAUGCGUGACUUAUCUUUUUUUUUCAUAUUUUUUUCAAAUAAGACGGUCAAACGUUGGACACGGAAACUCAGGGUUUGUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015787694.1	ncRNA:25   CAGUUUGCAACCUGUGCCUUUGGGU   1   ||||||||||||||||||||||||| targets:1500   GUCAAACGUUGGACACGGAAACCCA   1524 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group acetylajmalan esterase (LOC4341925), mRNA	acetylajmalan esterase(LOC4341925)	coding protein	psRNATarget
CT827968.1	ncRNA:25   CAGUUUGCAACCUGUGCCUUUGGGU   1   |||||||||||||||||||||=||| targets:470   GUCAAACGUUGGACACGGAAAUCCA   494 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN031I05, full insert sequence	NA	coding protein	psRNATarget
JB164349.1	ncRNA:25   CAGUUUGCAACCUGUGCCUUUGGGU   1   *|=||||||||||=||||||||||| targets:120   AUUAAACGUUGGAUACGGAAACCCA   144 Target Full Sequence	1.5	Sequence 2013 from Patent EP2559767	NA	coding protein	psRNATarget
HI403888.1	ncRNA:25   CAGUUUGCAACCUGUGCCUUUGGGU   1   *|=||||||||||=||||||||||| targets:120   AUUAAACGUUGGAUACGGAAACCCA   144 Target Full Sequence	1.5	Sequence 2013 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236018.1	ncRNA:25   CAGUUUGCAACCUGUGCCUUUGGGU   1   *|=||||||||||=||||||||||| targets:120   AUUAAACGUUGGAUACGGAAACCCA   144 Target Full Sequence	1.5	Sequence 2013 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015761929.1	ncRNA:25   CAGUUUGCAACCUGUGCCUUUGGGU   1   ||||||||||||||||*|||||||| targets:30   GUCAAACGUUGGACACAGAAACCCA   54 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4350187), transcript variant X2, mRNA	disease resistance protein RGA2(LOC4350187)	coding protein	psRNATarget
XM_015787836.1	ncRNA:25   CAGUUUGCAACCUGUGCCUUUGGGU   1   |||||||||||||||||||||||*= targets:1254   GUCAAACGUUGGACACGGAAACCAG   1278 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342071 (LOC4342071), mRNA	uncharacterized LOC4342071(LOC4342071)	coding protein	psRNATarget
AK071262.1	ncRNA:25   CAGUUUGCAACCUGUGCCUUUGGGU   1   |||||||||||||||||||||||*= targets:1382   GUCAAACGUUGGACACGGAAACCAG   1406 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023085J06, full insert sequence	NA	coding protein	psRNATarget
AK068180.1	ncRNA:25   CAGUUUGCAACCUGUGCCUUUGGGU   1   |*|||||||||||||||||||=||| targets:461   GACAAACGUUGGACACGGAAAUCCA   485 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013135E14, full insert sequence	NA	coding protein	psRNATarget
XM_015787999.1	ncRNA:25   CAGUUUGCAACCUGUGCCUUUGGGU   1   ||||||||||*||||=||||||||| targets:892   GUCAAACGUUAGACAUGGAAACCCA   916 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable glycosyltransferase At5g25310 (LOC107278352), transcript variant X2, mRNA	probable glycosyltransferase At5g25310(LOC107278352)	coding protein	psRNATarget
CT836215.1	ncRNA:25   CAGUUUGCAACCUGUGCCUUUGGGU   1   ||||||||||*||||=||||||||| targets:1161   GUCAAACGUUAGACAUGGAAACCCA   1185 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA223F11, full insert sequence	NA	coding protein	psRNATarget
XM_015787998.1	ncRNA:25   CAGUUUGCAACCUGUGCCUUUGGGU   1   ||||||||||*||||=||||||||| targets:1692   GUCAAACGUUAGACAUGGAAACCCA   1716 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable glycosyltransferase At5g25310 (LOC107278352), transcript variant X1, mRNA	probable glycosyltransferase At5g25310(LOC107278352)	coding protein	psRNATarget
XM_015783613.1	ncRNA:25   CAGUUUGCAACCUGUGCCUUUGGGU   1   ||||||=|||*|||||||||||||| targets:1   GUCAAAUGUUAGACACGGAAACCCA   25 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339531 (LOC4339531), mRNA	uncharacterized LOC4339531(LOC4339531)	coding protein	psRNATarget
LQ235925.1	ncRNA:25   CAGUUUGCAACCUGUGCCUUUGGGU   1   ||=||||||||*||||||||||=|| targets:151   GUUAAACGUUGAACACGGAAACUCA   175 Target Full Sequence	2.5	Sequence 1920 from Patent EP2985353	NA	coding protein	psRNATarget
HI403795.1	ncRNA:25   CAGUUUGCAACCUGUGCCUUUGGGU   1   ||=||||||||*||||||||||=|| targets:151   GUUAAACGUUGAACACGGAAACUCA   175 Target Full Sequence	2.5	Sequence 1920 from Patent EP2074227	NA	coding protein	psRNATarget
JB164256.1	ncRNA:25   CAGUUUGCAACCUGUGCCUUUGGGU   1   ||=||||||||*||||||||||=|| targets:151   GUUAAACGUUGAACACGGAAACUCA   175 Target Full Sequence	2.5	Sequence 1920 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015773455.1	ncRNA:22   UUUGCAACCUGUGCCUUUGGGU   1   |||||||||||||||||||||| targets:1   AAACGUUGGACACGGAAACCCA   22 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9268354 (LOC9268354), mRNA	uncharacterized LOC9268354(LOC9268354)	coding protein	psRNATarget
AK288660.1	ncRNA:25   CAGUUUGCAACCUGUGCCUUUGGGU   1   ||||||||||*||||||||||*||| targets:1511   GUCAAACGUUAGACACGGAAAGCCA   1535 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090057N05, full insert sequence	NA	coding protein	psRNATarget