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BaseInfo

ncRNA ID	novel_zma_miR10629
Species	Zea mays
Class	miRNA
Genome position	Chr2:128132922-128133041 [-]
Reference genome	RefGen_v4
Source	SRR5100248
Length	24
Mature sequence(if miRNA)	97 - AGGGCUAAUUUGGGAACUCCAUUU - 120
Stem-loop(if miRNA)	--       A         U        U  U      CC       -   U       AA   AGGGCUA UUUGGGAAC CCAUUUUU CG GGGAUU  UAUUUUC CAA GGAAAAU  A   ||||||| ||||||||| |||||||| || ||||||  ||||||| ||| |||||||   UCCCGAU AAACCUUUG GGUAAAAG GU CUCUAA  GUAGAAG GUU UCUUUUA  C AA       C         U        U  U      AA       C   -       AU
Stem-loop sequence	AGGGCUAAUUUGGGAACUCCAUUUUUUCGUGGGAUUCCUAUUUUCCAAUGGAAAAUAAACUAAUUUUCUUUGCGAAGAUGAAAAUCUCUUGUGAAAAUGGUGUUUCCAAACUAGCCCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008661273.2	ncRNA:24   UUUACCUCAAGGGUUUAAUCGGGA   1   ||||||=||||||||||||||||| targets:1472   AAAUGGGGUUCCCAAAUUAGCCCU   1495 Target Full Sequence	1.0	PREDICTED: Zea mays mannan endo-1,4-beta-mannosidase 6 (LOC103638326), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661272.2	ncRNA:24   UUUACCUCAAGGGUUUAAUCGGGA   1   ||||||=||||||||||||||||| targets:1697   AAAUGGGGUUCCCAAAUUAGCCCU   1720 Target Full Sequence	1.0	PREDICTED: Zea mays mannan endo-1,4-beta-mannosidase 6 (LOC103638326), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552563.1	ncRNA:24   UUUACCUCAAGGGUUUAAUCGGGA   1   ||||||||||||||||*||||||| targets:455   AAAUGGAGUUCCCAAACUAGCCCU   478 Target Full Sequence	1.5	PREDICTED: Zea mays probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (LOC103653427), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001350811.1	ncRNA:24   UUUACCUCAAGGGUUUAAUCGGGA   1   ||||||||||||||||*||||||| targets:2559   AAAUGGAGUUCCCAAACUAGCCCU   2582 Target Full Sequence	1.5	Zea mays uncharacterized LOC100278071 (LOC100278071), mRNA	NA	coding protein	psRNATarget
XM_020547541.1	ncRNA:24   UUUACCUCAAGGGUUUAAUCGGGA   1   ||||||=|||||||||*||||||| targets:1964   AAAUGGGGUUCCCAAACUAGCCCU   1987 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ080886.1	ncRNA:24   UUUACCUCAAGGGUUUAAUCGGGA   1   |||||*=|||=||||||||||||| targets:122   AAAUGAGGUUUCCAAAUUAGCCCU   145 Target Full Sequence	3.0	TSA: Zea mays contig16525, mRNA sequence	NA	coding protein	psRNATarget
LQ238393.1	ncRNA:24   UUUACCUCAAGGGUUUAAUCGGGA   1   ||||||*|||||||||*||||||| targets:105   AAAUGGUGUUCCCAAACUAGCCCU   128 Target Full Sequence	2.5	Sequence 4388 from Patent EP2985353	NA	coding protein	psRNATarget
JB166724.1	ncRNA:24   UUUACCUCAAGGGUUUAAUCGGGA   1   ||||||*|||||||||*||||||| targets:105   AAAUGGUGUUCCCAAACUAGCCCU   128 Target Full Sequence	2.5	Sequence 4388 from Patent EP2559767	NA	coding protein	psRNATarget
HI406263.1	ncRNA:24   UUUACCUCAAGGGUUUAAUCGGGA   1   ||||||*|||||||||*||||||| targets:105   AAAUGGUGUUCCCAAACUAGCCCU   128 Target Full Sequence	2.5	Sequence 4388 from Patent EP2074227	NA	coding protein	psRNATarget
BT084259.1	ncRNA:24   UUUACCUCAAGGGUUUAAUCGGGA   1   ||||*|||||||||||*||||||| targets:1009   AAAUUGAGUUCCCAAACUAGCCCU   1032 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0094M03 mRNA, complete cds	NA	coding protein	psRNATarget
EU967093.1	ncRNA:24   UUUACCUCAAGGGUUUAAUCGGGA   1   ||||*|||||||||||*||||||| targets:1005   AAAUUGAGUUCCCAAACUAGCCCU   1028 Target Full Sequence	1.5	Zea mays clone 299427 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150806.2	ncRNA:24   UUUACCUCAAGGGUUUAAUCGGGA   1   ||||*|||||||||||*||||||| targets:1055   AAAUUGAGUUCCCAAACUAGCCCU   1078 Target Full Sequence	1.5	Zea mays Tyrosine specific protein phosphatase-like (LOC100277156), mRNA	NA	coding protein	psRNATarget
EU973119.1	ncRNA:24   UUUACCUCAAGGGUUUAAUCGGGA   1   ||||||*|||||||||*||||||| targets:1447   AAAUGGUGUUCCCAAACUAGCCCU   1470 Target Full Sequence	2.5	Zea mays clone 393646 mRNA sequence	NA	coding protein	psRNATarget
NM_001196460.1	ncRNA:24   UUUACCUCAAGGGUUUAAUCGGGA   1   ||||||*|||||||||*||||||| targets:1449   AAAUGGUGUUCCCAAACUAGCCCU   1472 Target Full Sequence	2.5	Zea mays Mosaic virus helicase domain-binding protein (LOC100501804), mRNA	NA	coding protein	psRNATarget
BT086269.1	ncRNA:24   UUUACCUCAAGGGUUUAAUCGGGA   1   ||||||*|||||||||*||||||| targets:1449   AAAUGGUGUUCCCAAACUAGCCCU   1472 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0140P03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176977.1	ncRNA:24   UUUACCUCAAGGGUUUAAUCGGGA   1   ||||*|||||*|||||||||*||| targets:1003   AAAUAGAGUUACCAAAUUAGACCU   1026 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384440 (LOC100384440), mRNA	NA	coding protein	psRNATarget
BT070134.1	ncRNA:24   UUUACCUCAAGGGUUUAAUCGGGA   1   ||||*|||||*|||||||||*||| targets:1003   AAAUAGAGUUACCAAAUUAGACCU   1026 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0118M19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008652775.2	ncRNA:24   UUUACCUCAAGGGUUUAAUCGGGA   1   |||*||*|||||||||*||||||| targets:15   AAACGGUGUUCCCAAAGUAGCCCU   38 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100217039 (LOC100217039), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ069159.1	ncRNA:24   UUUACCUCAAGGGUUUAAUCGGGA   1   =|*|*|||||=|||||*||||||| targets:88   GAUUUGAGUUUCCAAACUAGCCCU   111 Target Full Sequence	2.5	TSA: Zea mays contig04794, mRNA sequence	NA	coding protein	psRNATarget