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BaseInfo

ncRNA ID novel_zma_miR10616
Species Zea mays
Class miRNA
Genome position Chr2:156419498-156419567 [-]
Reference genome RefGen_v4
Source SRR5100248
Length 24
Mature sequence(if miRNA) 1 - UUCUUUGUCGAGUGUUGUGGCCUU - 24
Stem-loop(if miRNA) --                       GCAC   UGG
  GGUCAUAGCACUCGACAAAGAAG    ACC   G
  |||||||||||||||||||||||    |||
  CCGGUGUUGUGAGCUGUUUCUUC    UGG   C
UU                       GAAA   UCA
Stem-loop sequence GGUCAUAGCACUCGACAAAGAAGGCACACCUGGGCACUGGUAAAGCUUCUUUGUCGAGUGUUGUGGCCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ239092.1
ncRNA:24   UUCCGGUGUUGUGAGCUGUUUCUU   1
  =*|||||=||||||||=|||||||
targets:135   GUGGCCAUAACACUCGGCAAAGAA   158

2.5 Sequence 5087 from Patent EP2985353 NA coding protein psRNATarget
HI406962.1
ncRNA:24   UUCCGGUGUUGUGAGCUGUUUCUU   1
  =*|||||=||||||||=|||||||
targets:135   GUGGCCAUAACACUCGGCAAAGAA   158

2.5 Sequence 5087 from Patent EP2074227 NA coding protein psRNATarget
JB167423.1
ncRNA:24   UUCCGGUGUUGUGAGCUGUUUCUU   1
  =*|||||=||||||||=|||||||
targets:135   GUGGCCAUAACACUCGGCAAAGAA   158

2.5 Sequence 5087 from Patent EP2559767 NA coding protein psRNATarget
JB167146.1
ncRNA:21   CGGUGUUGUGAGCUGUUUCUU   1
  ||||=||||||||=|||||||
targets:1   GCCAUAACACUCGGCAAAGAA   21

2.5 Sequence 4810 from Patent EP2559767 NA coding protein psRNATarget
HI406685.1
ncRNA:21   CGGUGUUGUGAGCUGUUUCUU   1
  ||||=||||||||=|||||||
targets:1   GCCAUAACACUCGGCAAAGAA   21

2.5 Sequence 4810 from Patent EP2074227 NA coding protein psRNATarget
LQ238815.1
ncRNA:21   CGGUGUUGUGAGCUGUUUCUU   1
  ||||=||||||||=|||||||
targets:1   GCCAUAACACUCGGCAAAGAA   21

2.5 Sequence 4810 from Patent EP2985353 NA coding protein psRNATarget
EZ101998.1
ncRNA:24   UUCCGGUGUUGUGAGCUGUUUCUU   1
  =||--==|||||||||||||||||
targets:8   GAG--UGCAACACUCGACAAAGAA   29

2.0 TSA: Zea mays contig37654, mRNA sequence NA coding protein psRNATarget
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