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BaseInfo

ncRNA ID novel_zma_miR10615
Species Zea mays
Class miRNA
Genome position Chr2:159290213-159290316 [-]
Reference genome RefGen_v4
Source SRR5100248;SRR5100255
Length 24
Mature sequence(if miRNA) 1 - AGAUACCGGACUUGUCAAGUGAUU - 24
Stem-loop(if miRNA) -- UG   CC   -U          U GAUG   A  AUG  UG  UGAU     
  U  CUU  GCA  UUUGGUAUCU C    CUU UA   UU  CG    GGGUGA
  |  |||  |||  |||||||||| |    ||| ||   ||  ||    |||||A
  A  GAA  UGU  AGGCCAUAGA G    GAA AU   AA  GU    CUCGCA
UU GU   -C   UC          C -AAA   -  GGA  GU  ---U     
Stem-loop sequence UUGCUUCCGCAUUUUGGUAUCUUCGAUGCUUAUAAUGUUUGCGUGAUGGGUGAAACGCUCUUGUGAAAGGUAAAGAAAGCAGAUACCGGACUUGUCAAGUGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ108439.1
ncRNA:24   UUAGUGAACUGUUCAGGCCAUAGA   1
  |=|||||||||||||=||||||||
targets:45   AGUCACUUGACAAGUUCGGUAUCU   68

1.5 TSA: Zea mays contig44098, mRNA sequence NA coding protein psRNATarget
EU944407.1
ncRNA:24   UUAGUGAACUGUUCAGGCCAUAGA   1
  |=|||||||||||||=||||||||
targets:276   AGUCACUUGACAAGUUCGGUAUCU   299

1.5 Zea mays clone 217991 mRNA sequence NA coding protein psRNATarget