Search result

BaseInfo

ncRNA ID	novel_zma_miR10593
Species	Zea mays
Class	miRNA
Genome position	Chr2:241674369-241674503 [-]
Reference genome	RefGen_v4
Source	SRR5100248
Length	24
Mature sequence(if miRNA)	1 - AAAAUGGUGGGACUAAAAAUUAGU - 24
Stem-loop(if miRNA)	--              U   A                 AC      A C              A      UAAUUUUUAGUCCC CCA UUUAUUCCACUUUAGUC  UAAAUU U AAAUAUGGAAAUUA AAUA   |||||||||||||| ||| |||||||||||||||||  |||||| | |||||||||||||| |||G   AUUAAAAAUCAGGG GGU AAAUAAGGUGAAAUCAG  AUUUAA G UUUAUACCUUUGAU UUGA UG              U   A                 AU      C U              A
Stem-loop sequence	UAAUUUUUAGUCCCUCCAAUUUAUUCCACUUUAGUCACUAAAUUAUCAAAUAUGGAAAUUAAAAUAGAGUUAUAGUUUCCAUAUUUUGCAAUUUAUAGACUAAAGUGGAAUAAAAUGGUGGGACUAAAAAUUAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008655750.2	ncRNA:24   UGAUUAAAAAUCAGGGUGGUAAAA   1   ||||||||||||||=||||||||| targets:2432   ACUAAUUUUUAGUCUCACCAUUUU   2455 Target Full Sequence	1.5	PREDICTED: Zea mays PHD finger protein MALE STERILITY 1-like (LOC103643406), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:24   UGAUUAAAAAUCAGGGUGGUAAAA   1   ||||||||||||||||*||||||| targets:2979   ACUAAUUUUUAGUCCCUCCAUUUU   3002 Target Full Sequence	1.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:24   UGAUUAAAAAUCAGGGUGGUAAAA   1   ||||||||||||||||*||||||| targets:2590   ACUAAUUUUUAGUCCCUCCAUUUU   2613 Target Full Sequence	1.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:24   UGAUUAAAAAUCAGGGUGGUAAAA   1   ||||||||||||||||*||||||| targets:472   ACUAAUUUUUAGUCCCUCCAUUUU   495 Target Full Sequence	1.5	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008654984.2	ncRNA:24   UGAUUAAAAAUCAGGGUGGUAAAA   1   ||||||*||||||||||=|||||| targets:2923   ACUAAUAUUUAGUCCCAUCAUUUU   2946 Target Full Sequence	2.5	PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA	NA	coding protein	psRNATarget
XM_020547858.1	ncRNA:24   UGAUUAAAAAUCAGGGUGGUAAAA   1   ||||||*||||||||||=|||||| targets:1558   ACUAAUGUUUAGUCCCAUCAUUUU   1581 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   UGAUUAAAAAUCAGGGUGGUAAAA   1   ||||||*||||||||||=|||||| targets:160   ACUAAUGUUUAGUCCCAUCAUUUU   183 Target Full Sequence	2.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   UGAUUAAAAAUCAGGGUGGUAAAA   1   ||||||*|||||||||*||||||| targets:284   ACUAAUGUUUAGUCCCUCCAUUUU   307 Target Full Sequence	2.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   UGAUUAAAAAUCAGGGUGGUAAAA   1   ||||||*||||||||||=|||||| targets:35   ACUAAUGUUUAGUCCCAUCAUUUU   58 Target Full Sequence	2.5	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   UGAUUAAAAAUCAGGGUGGUAAAA   1   ||||||*|||||||||*||||||| targets:159   ACUAAUGUUUAGUCCCUCCAUUUU   182 Target Full Sequence	2.5	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   UGAUUAAAAAUCAGGGUGGUAAAA   1   ||||||*||||||||||=|||||| targets:35   ACUAAUGUUUAGUCCCAUCAUUUU   58 Target Full Sequence	2.5	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   UGAUUAAAAAUCAGGGUGGUAAAA   1   ||||||*|||||||||*||||||| targets:159   ACUAAUGUUUAGUCCCUCCAUUUU   182 Target Full Sequence	2.5	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   UGAUUAAAAAUCAGGGUGGUAAAA   1   ||||||*||||||||||=|||||| targets:35   ACUAAUGUUUAGUCCCAUCAUUUU   58 Target Full Sequence	2.5	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   UGAUUAAAAAUCAGGGUGGUAAAA   1   ||||||*|||||||||*||||||| targets:159   ACUAAUGUUUAGUCCCUCCAUUUU   182 Target Full Sequence	2.5	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235170.1	ncRNA:24   UGAUUAAAAAUCAGGGUGGUAAAA   1   ||||||*||||||||||=|||||| targets:21   ACUAAUGUUUAGUCCCAUCAUUUU   44 Target Full Sequence	2.5	Sequence 1165 from Patent EP2985353	NA	coding protein	psRNATarget
HI403040.1	ncRNA:24   UGAUUAAAAAUCAGGGUGGUAAAA   1   ||||||*||||||||||=|||||| targets:21   ACUAAUGUUUAGUCCCAUCAUUUU   44 Target Full Sequence	2.5	Sequence 1165 from Patent EP2074227	NA	coding protein	psRNATarget
JB163501.1	ncRNA:24   UGAUUAAAAAUCAGGGUGGUAAAA   1   ||||||*||||||||||=|||||| targets:21   ACUAAUGUUUAGUCCCAUCAUUUU   44 Target Full Sequence	2.5	Sequence 1165 from Patent EP2559767	NA	coding protein	psRNATarget
HI406419.1	ncRNA:24   UGAUUAAAAAUCAGGGUGGUAAAA   1   ||||||*|||||||||*||||||| targets:68   ACUAAUGUUUAGUCCCUCCAUUUU   91 Target Full Sequence	2.5	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget
JB166880.1	ncRNA:24   UGAUUAAAAAUCAGGGUGGUAAAA   1   ||||||*|||||||||*||||||| targets:68   ACUAAUGUUUAGUCCCUCCAUUUU   91 Target Full Sequence	2.5	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:24   UGAUUAAAAAUCAGGGUGGUAAAA   1   ||||||*|||||||||*||||||| targets:68   ACUAAUGUUUAGUCCCUCCAUUUU   91 Target Full Sequence	2.5	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget