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BaseInfo

ncRNA ID	novel_zma_miR10592
Species	Zea mays
Class	miRNA
Genome position	Chr2:244296578-244296645 [-]
Reference genome	RefGen_v4
Source	SRR5100248;SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AUUCCAUGUCCACCAAAUCAGCCU - 24
Stem-loop(if miRNA)	--        U       A A    -   C   G   GCUGGUUU GUGGACA G AAUU AGA UUG U   |||||||| ||||||| | |||| ||| ||| A   CGACUAAA CACCUGU C UUAA UUU AAC U UC        C       A C    C   A   U
Stem-loop sequence	GCUGGUUUUGUGGACAAGAAAUUAGACUUGGUAUUCAAAUUUCAAUUCCAUGUCCACCAAAUCAGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT034847.1	ncRNA:24   UCCGACUAAACCACCUGUACCUUA   1   =|||||||||||||||=||||||| targets:732   GGGCUGAUUUGGUGGAUAUGGAAU   755 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0022M13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137974.1	ncRNA:24   UCCGACUAAACCACCUGUACCUUA   1   =|||||||||||||||=||||||| targets:732   GGGCUGAUUUGGUGGAUAUGGAAU   755 Target Full Sequence	1.5	Zea mays 60S ribosomal protein L22-2 (LOC100192778), mRNA	NA	coding protein	psRNATarget
XM_020552919.1	ncRNA:24   UCCGACUAAACCACCUGUACCUUA   1   =|||||=||||||||||||||||| targets:1500   GGGCUGGUUUGGUGGACAUGGAAU   1523 Target Full Sequence	1.0	PREDICTED: Zea mays negative regulator of systemic acquired resistance SNI1 (LOC103654875), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020552918.1	ncRNA:24   UCCGACUAAACCACCUGUACCUUA   1   =|||||=||||||||||||||||| targets:2153   GGGCUGGUUUGGUGGACAUGGAAU   2176 Target Full Sequence	1.0	PREDICTED: Zea mays negative regulator of systemic acquired resistance SNI1 (LOC103654875), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU942647.1	ncRNA:24   UC-CGACUAAACCACCUGUACCUUA   1   ||-|||||||||||||||||||||| targets:427   AGAGCUGAUUUGGUGGACAUGGAAU   451 Target Full Sequence	0.0	Zea mays clone 1526747 mRNA sequence	NA	coding protein	psRNATarget
HI402997.1	ncRNA:24   UC-CGACUAAACCACCUGUACCUUA   1   ||-||||||||||||||||*||||| targets:2   AGAGCUGAUUUGGUGGACAGGGAAU   26 Target Full Sequence	1.5	Sequence 1122 from Patent EP2074227	NA	coding protein	psRNATarget
JB163458.1	ncRNA:24   UC-CGACUAAACCACCUGUACCUUA   1   ||-||||||||||||||||*||||| targets:2   AGAGCUGAUUUGGUGGACAGGGAAU   26 Target Full Sequence	1.5	Sequence 1122 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235127.1	ncRNA:24   UC-CGACUAAACCACCUGUACCUUA   1   ||-||||||||||||||||*||||| targets:2   AGAGCUGAUUUGGUGGACAGGGAAU   26 Target Full Sequence	1.5	Sequence 1122 from Patent EP2985353	NA	coding protein	psRNATarget