Search result

BaseInfo

ncRNA ID	novel_zma_miR10585
Species	Zea mays
Class	miRNA
Genome position	Chr2:211047546-211047629 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	19
Mature sequence(if miRNA)	1 - CCUGGAAAUGGAACAGCCU - 19
Stem-loop(if miRNA)	--C     A     A A    GCAACUUC       AU      A    CUGGA AUGGA C GCCU        UCUGUGU  UGGUAC A    ||||| ||||| | ||||        |||||||  |||||| U    GACCU UACUU G CGGA        AGACACG  AUUAUG U UUC     C     A C    -------A       GU      U
Stem-loop sequence	CCUGGAAAUGGAACAGCCUGCAACUUCUCUGUGUAUUGGUACAAUUUGUAUUAUGGCACAGAAAGGCCGAUUCAUCUCCAGCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT084391.1	ncRNA:19   UCCGACAAGGUAAAGGUCC   1   |**|||||||||||||||| targets:54   AACCUGUUCCAUUUCCAGG   72 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0108G17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670294.2	ncRNA:19   UCCGACAAGGUAAAGGUCC   1   |**|||||||||||||||| targets:1182   AACCUGUUCCAUUUCCAGG   1200 Target Full Sequence	3.0	PREDICTED: Zea mays Ubiquitin-like superfamily protein (pco141842), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001326400.1	ncRNA:19   UCCGACAAGGUAAAGGUCC   1   |**|||||||||||||||| targets:1369   AACCUGUUCCAUUUCCAGG   1387 Target Full Sequence	3.0	Zea mays Ubiquitin-like superfamily protein (pco141842), mRNA	NA	coding protein	psRNATarget
XM_008654802.2	ncRNA:19   UCCGACAAGGUAAAGGUCC   1   ||||*||||||*||||||| targets:741   AGGCAGUUCCAGUUCCAGG   759 Target Full Sequence	2.5	PREDICTED: Zea mays trihelix transcription factor ASIL1 (LOC103633124), mRNA	NA	coding protein	psRNATarget