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BaseInfo

ncRNA ID novel_zma_miR10581
Species Zea mays
Class miRNA
Genome position Chr2:192364347-192364534 [+]
Reference genome RefGen_v4
Source SRR5100248;SRR5100255
Length 24
Mature sequence(if miRNA) 1 - ACCCGGAUUGUAGUUGUGUUUAUA - 24
Stem-loop(if miRNA) --A    -    -     -----  U     ---- AUUUGUAAAUUUCAGUUUCGCCCUAUUCACCCCCCCUCUAGGCGACUAUCAAUUGGUAUCAGAG
   CCCG GAUU GUAGU     UG GUUUA    U                                                                C
   |||| |||| |||||     || |||||    |
   GGGC CUGA CAUCA     AA AGUGG    A                                                                C
CGA    A    A     UCCGA  -     CCAG GGUAGAGGAAGAACCGCACUAGAGGGCUGUAGUGAAGCUCGCCAAUCCGAGAUUACUUCUUGGA
Stem-loop sequence ACCCGGAUUGUAGUUGUGUUUAUAUUUGUAAAUUUCAGUUUCGCCCUAUUCACCCCCCCUCUAGGCGACUAUCAAUUGGUAUCAGAGCCAGGUUCUUCAUUAGAGCCUAACCGCUCGAAGUGAUGUCGGGAGAUCACGCCAAGAAGGAGAUGGAGACCGGUGAAAAGCCUACUACAAGUCACGGGAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU948909.1
ncRNA:24   AUAUUUGUGUUGAUGUUAGGCCCA   1
  |||||||||||||||||*||||||
targets:142   UAUAAACACAACUACAAGCCGGGU   165

1.5 Zea mays clone 389567 mRNA sequence NA coding protein psRNATarget
EZ094420.1
ncRNA:24   AUAUUUGUGUUGAUGUUAGGCCCA   1
  |||||||||||||||||*|||||*
targets:29   UAUAAACACAACUACAAGCCGGGG   52

2.5 TSA: Zea mays contig30072, mRNA sequence NA coding protein psRNATarget