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BaseInfo

ncRNA ID novel_zma_miR10576
Species Zea mays
Class miRNA
Genome position Chr2:177217714-177217779 [+]
Reference genome RefGen_v4
Source SRR5100248
Length 20
Mature sequence(if miRNA) 1 - AUUGGAGAGGCUAGAAUCUC - 20
Stem-loop(if miRNA) --AUUG   A            UCUU        A
      GAG GGCUAGAAUCUC    CUUAUUUA U
      ||| ||||||||||||    ||||||||
      CUC CCGAUCUUAGGG    GAAUAAGU U
CUUAAA   C            ----        U
Stem-loop sequence AUUGGAGAGGCUAGAAUCUCUCUUCUUAUUUAAUUUUGAAUAAGGGGAUUCUAGCCCCUCAAAUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ074100.1
ncRNA:20   CUCUAAGAUCGGAGAGGUUA   1
  |=||||||||||*|||||||
targets:211   GGGAUUCUAGCCCCUCCAAU   230

2.5 TSA: Zea mays contig09737, mRNA sequence NA coding protein psRNATarget
EU943186.1
ncRNA:20   CUCUAAGAUCGGAGAGGUUA   1
  ||||||=|||*|||||||||
targets:1137   GAGAUUUUAGGCUCUCCAAU   1156

2.5 Zea mays clone 1582065 mRNA sequence NA coding protein psRNATarget