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BaseInfo

ncRNA ID novel_zma_miR10575
Species Zea mays
Class miRNA
Genome position Chr2:176852014-176852115 [+]
Reference genome RefGen_v4
Source SRR5100248
Length 21
Mature sequence(if miRNA) 82 - UGCAGCCGGACUAGCACAACU - 102
Stem-loop(if miRNA) --GG    -  -    A  A    AACA  U   - --AAAA  C  -     AU
    GUGC AG CCGG CU GCAC    AG GCG C      AC GA AGUCU  C
    |||| || |||| || ||||    || ||| |      || || |||||  G
    CACG UC GGCC GA CGUG    UC CGC G      UG CU UCAGA  C
UCAA    A  A    -  -    GGAA  -   U AAGACG  C  A     AG
Stem-loop sequence GGGUGCAGCCGGACUAGCACAACAAGUGCGCAAAAACCGAAGUCUAUCGCGAAGACUAUCCGUGCAGAAGUCGCCUAAGGGUGCAGCCGGACUAGCACAACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008659388.1
ncRNA:21   UCAACACGAUCAGGCCGACGU   1
  =*|||||||||||||||*||*
targets:1105   GCUUGUGCUAGUCCGGCAGCU   1125

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At2g27610 (LOC103637131), mRNA NA coding protein psRNATarget
XM_020538181.1
ncRNA:21   UCAACACGAUCAGGCCGACGU   1
  =*|||||||||||||||*||*
targets:1384   GCUUGUGCUAGUCCGGCAGCU   1404

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At2g27610 (LOC109939256), mRNA NA coding protein psRNATarget