Search result

BaseInfo

ncRNA ID	novel_zma_miR10574
Species	Zea mays
Class	miRNA
Genome position	Chr2:174222359-174222413 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	24
Mature sequence(if miRNA)	32 - AACACUCGGCAAAUAGCUCUUUGC - 55
Stem-loop(if miRNA)	--     A   C         A  CAAA   AAAGA GCU UUUGCCGAG GU    A   ||||| ||| ||||||||| ||   UUUCU CGA AAACGGCUC CA    A CG     -   U         A  AAAA
Stem-loop sequence	AAAGAAGCUCUUUGCCGAGAGUCAAAAAAAAAACACUCGGCAAAUAGCUCUUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB167154.1	ncRNA:24   CGUUUCUCGAUAAACGGCUCACAA   1   ||||||||||*||||||||||||| targets:100   GCAAAGAGCUCUUUGCCGAGUGUU   123 Target Full Sequence	1.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   CGUUUCUCGAUAAACGGCUCACAA   1   ||||||||||*||||||||||||* targets:60   GCAAAGAGCUCUUUGCCGAGUGUC   83 Target Full Sequence	2.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   CGUUUCU-CGAUAAACGGCUCACAA   1   |||||||-|||*||||||||||||| targets:19   GCAAAGAAGCUCUUUGCCGAGUGUU   43 Target Full Sequence	3.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   CGUUUCUCGAUAAACGGCUCACAA   1   ||||||||||*||||||||||||| targets:100   GCAAAGAGCUCUUUGCCGAGUGUU   123 Target Full Sequence	1.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   CGUUUCUCGAUAAACGGCUCACAA   1   ||||||||||*||||||||||||* targets:60   GCAAAGAGCUCUUUGCCGAGUGUC   83 Target Full Sequence	2.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   CGUUUCU-CGAUAAACGGCUCACAA   1   |||||||-|||*||||||||||||| targets:19   GCAAAGAAGCUCUUUGCCGAGUGUU   43 Target Full Sequence	3.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   CGUUUCUCGAUAAACGGCUCACAA   1   ||||||||||*||||||||||||| targets:100   GCAAAGAGCUCUUUGCCGAGUGUU   123 Target Full Sequence	1.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   CGUUUCUCGAUAAACGGCUCACAA   1   ||||||||||*||||||||||||* targets:60   GCAAAGAGCUCUUUGCCGAGUGUC   83 Target Full Sequence	2.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   CGUUUCU-CGAUAAACGGCUCACAA   1   |||||||-|||*||||||||||||| targets:19   GCAAAGAAGCUCUUUGCCGAGUGUU   43 Target Full Sequence	3.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   CGUUUCUCGAUAAACGGCUCACAA   1   ||||||||||*||||||||||||| targets:1980   GCAAAGAGCUCUUUGCCGAGUGUU   2003 Target Full Sequence	1.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   CGUUUCUCGAUAAACGGCUCACAA   1   ||||||||||*||||||||||||| targets:1980   GCAAAGAGCUCUUUGCCGAGUGUU   2003 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
EU949560.1	ncRNA:24   CGUUUCUCGAUAAACGGCUCACAA   1   ||||||=|=|*||||||||||||| targets:585   GCAAAGGGUUCUUUGCCGAGUGUU   608 Target Full Sequence	3.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
XM_008671736.2	ncRNA:24   CGUUUCUCGAUAAACGGCUCACAA   1   |||||||*=||||||||||||||* targets:177   GCAAAGAUUUAUUUGCCGAGUGUA   200 Target Full Sequence	3.0	PREDICTED: Zea mays probable serine/threonine-protein kinase PBL28 (LOC103647166), mRNA	NA	coding protein	psRNATarget
EZ050721.1	ncRNA:24   CGUUUCUCGAUAAACGGCUCACAA   1   ||*=|||*||*||||||||||||* targets:43   GCUGAGAUCUUUUUGCCGAGUGUC   66 Target Full Sequence	3.0	TSA: Zea mays contig51841, mRNA sequence	NA	coding protein	psRNATarget