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BaseInfo

ncRNA ID novel_zma_miR10570
Species Zea mays
Class miRNA
Genome position Chr7:146514999-146515059 [+]
Reference genome RefGen_v4
Source SRR1997865
Length 24
Mature sequence(if miRNA) 1 - GCGCGGGAACGAGGACGAGACGGG - 24
Stem-loop(if miRNA) --       AAC     -    ACG   G   G
  GCGCGGG   GAGGA CGAG   GGC CUC C
  |||||||   ||||| ||||   ||| |||
  UGUGCCC   UUCCU GCUC   CCG GAG G
GG       -CC     C    --G   -   U
Stem-loop sequence GCGCGGGAACGAGGACGAGACGGGCGCUCGCGUGAGGCCGCUCGCUCCUUCCCCCGUGUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT036940.1
ncRNA:24   GGGCAGAGCAGGAGCAAGGGCGCG   1
  *|=|||||||||||||*|||||||
targets:1098   ACUGUCUCGUCCUCGUCCCCGCGC   1121

1.5 Zea mays full-length cDNA clone ZM_BFb0148D20 mRNA, complete cds NA coding protein psRNATarget
BT054635.2
ncRNA:24   GGGCAGAGCAGGAGCAAGGGCGCG   1
  ||=|||*||||||||*||||||||
targets:116   CCUGUCCCGUCCUCGGUCCCGCGC   139

2.5 Zea mays full-length cDNA clone ZM_BFb0017I20 mRNA, complete cds NA coding protein psRNATarget
EU940966.1
ncRNA:24   GGGCAGAGCAGGAGCAAGGGCGCG   1
  ||=|||*||||||||*||||||||
targets:809   CCUGUCCCGUCCUCGGUCCCGCGC   832

2.5 Zea mays clone 1223688 mRNA sequence NA coding protein psRNATarget
EU952144.1
ncRNA:24   GGGCAGAGCAGGAGCAAGGGCGCG   1
  ||=|||*||||||||*||||||||
targets:1515   CCUGUCCCGUCCUCGGUCCCGCGC   1538

2.5 Zea mays clone 1212406 mRNA sequence NA coding protein psRNATarget