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BaseInfo

ncRNA ID novel_zma_miR10559
Species Zea mays
Class miRNA
Genome position Chr2:145876288-145876393 [+]
Reference genome RefGen_v4
Source SRR5100248
Length 24
Mature sequence(if miRNA) 83 - GUUGAUGUAGUAUGACUUAGGGGU - 106
Stem-loop(if miRNA) --    -U      G  U -         CUAC       UG -UC     AA   U
  CUCU  GUUAUA CU C UUAGCUCGG    GUGUAAU  G   CAUCA  GAC U
  ||||  |||||| || | |||||||||    |||||||  |   |||||  |||
  GGGA  CAGUAU GA G AGUUGAGUU    CAUGUUG  U   GUAGU  UUG G
UG    UU      -  U U         ----       GU GUA     GG   G
Stem-loop sequence CUCUUGUUAUAGCUUCUUAGCUCGGCUACGUGUAAUUGGUCCAUCAAAGACUUGGGUUGGUGAUGAUGUUGGUUGUACUUGAGUUGAUGUAGUAUGACUUAGGGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT017298.1
ncRNA:24   UGGGGAUUCAGUAUGAUGUAGUUG   1
  |||*|*||||||||*|||||||||
targets:207   ACCACCAAGUCAUAGUACAUCAAC   230

2.5 Zea mays clone EL01N0315H09.c mRNA sequence NA coding protein psRNATarget
XM_008645964.2
ncRNA:24   UGGGGAUUCAGUAUGAUGUAGUUG   1
  |||*|*||||||||*|||||||||
targets:1741   ACCACCAAGUCAUAGUACAUCAAC   1764

2.5 PREDICTED: Zea mays uncharacterized LOC100501171 (LOC100501171), transcript variant X1, mRNA NA coding protein psRNATarget