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BaseInfo

ncRNA ID	novel_zma_miR10549
Species	Zea mays
Class	miRNA
Genome position	Chr2:110454043-110454103 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	22
Mature sequence(if miRNA)	40 - AGAGACGUGUCUGACUUGGCCC - 61
Stem-loop(if miRNA)	--AA     -     -       ---C     G     CAAGU AGGCA GUCUCUG    UCCAU A     ||||| ||||| |||||||    |||||     GUUCA UCUGU CAGAGAC    AGGUG U CCCG     G     G       AAGC     G
Stem-loop sequence	AACAAGUAGGCAGUCUCUGCUCCAUGAUGGUGGACGAACAGAGACGUGUCUGACUUGGCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020543461.1	ncRNA:22   CCCGGUUCAGUCUGUGCAGAGA   1   *||||||||||||||||||||| targets:5   AGGCCAAGUCAGACACGUCUCU   26 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109942113), mRNA	NA	coding protein	psRNATarget
XM_020543075.1	ncRNA:22   CCCGGUUCAGUCUGUGCAGAGA   1   *||||||||||||||||||||| targets:101   AGGCCAAGUCAGACACGUCUCU   122 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC103645158), mRNA	NA	coding protein	psRNATarget
XM_020537952.1	ncRNA:22   CCCGGUUCAGUCUGUGCAGAGA   1   *||||||||||||||||||||| targets:101   AGGCCAAGUCAGACACGUCUCU   122 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109939651), mRNA	NA	coding protein	psRNATarget
XM_020537949.1	ncRNA:22   CCCGGUUCAGUCUGUGCAGAGA   1   *||||||||||||||||||||| targets:101   AGGCCAAGUCAGACACGUCUCU   122 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109939648), mRNA	NA	coding protein	psRNATarget
XM_020547229.1	ncRNA:22   CCCGGUUCAGUCUGUGCAGAGA   1   *||||||||||||||||||||| targets:287   AGGCCAAGUCAGACACGUCUCU   308 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109943727), mRNA	NA	coding protein	psRNATarget
XM_020540018.1	ncRNA:22   CCCGGUUCAGUCUGUGCAGAGA   1   *||||||||||||||||||||| targets:101   AGGCCAAGUCAGACACGUCUCU   122 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109940483), mRNA	NA	coding protein	psRNATarget
XM_020540017.1	ncRNA:22   CCCGGUUCAGUCUGUGCAGAGA   1   *||||||||||||||||||||| targets:257   AGGCCAAGUCAGACACGUCUCU   278 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109940482), mRNA	NA	coding protein	psRNATarget
XM_020540269.1	ncRNA:22   CCCGGUUCAGUCUGUGCAGAGA   1   *|||=||||||||||||||||| targets:2099   AGGCUAAGUCAGACACGUCUCU   2120 Target Full Sequence	1.0	PREDICTED: Zea mays putative Ser/Thr protein phosphatase family protein (LOC100191359), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550925.1	ncRNA:22   CCCGGUUCAGUCUGUGCAGAGA   1   *||||||||||*|||||||||| targets:239   AGGCCAAGUCAUACACGUCUCU   260 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109945114), mRNA	NA	coding protein	psRNATarget
XM_020545510.1	ncRNA:22   CCCGGUUCAGUCUGUGCAGAGA   1   *|||||||||*||||||||||| targets:1316   AGGCCAAGUCCGACACGUCUCU   1337 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109942940 (LOC109942940), mRNA	NA	coding protein	psRNATarget
XM_008662044.2	ncRNA:22   CCCGGUUCAGUCUGUGCAGAGA   1   *|||||||||||||||*||||* targets:4695   AGGCCAAGUCAGACACAUCUCG   4716 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103639282 (LOC103639282), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546483.1	ncRNA:22   CCCGGUUCAGUCUGUGCAGAGA   1   *|||||||||||||||*||||* targets:4695   AGGCCAAGUCAGACACAUCUCG   4716 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103639282 (LOC103639282), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552031.1	ncRNA:22   CCCGGUUCAGUCUGUGCAGAGA   1   **||=|||||||||||*||||| targets:164   AAGCUAAGUCAGACACCUCUCU   185 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109945704), mRNA	NA	coding protein	psRNATarget
XM_020550961.1	ncRNA:22   CCCGGUUCAGUCUGUGCAGAGA   1   **||=|||||||||||*||||| targets:467   AAGCUAAGUCAGACACCUCUCU   488 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109945145), mRNA	NA	coding protein	psRNATarget
NM_001138241.1	ncRNA:22   CCCGGUUCAGUCUGUGCAGAGA   1   *|*||||*||*||||||||||| targets:71   UGUCCAACUCCGACACGUCUCU   92 Target Full Sequence	2.5	Zea mays uncharacterized LOC100193075 (IDP256), mRNA	NA	coding protein	psRNATarget
BT035234.1	ncRNA:22   CCCGGUUCAGUCUGUGCAGAGA   1   *|*||||*||*||||||||||| targets:71   UGUCCAACUCCGACACGUCUCU   92 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0047A22 mRNA, complete cds	NA	coding protein	psRNATarget