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BaseInfo

ncRNA ID	novel_zma_miR10544
Species	Zea mays
Class	miRNA
Genome position	Chr2:87302432-87302561 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	24
Mature sequence(if miRNA)	107 - CACAAGAUGCAGUUGAUGGACGAC - 130
Stem-loop(if miRNA)	--   G   UG -AA         CUACUUU        U   ACA    C     G      AUUUA   CGU UAU  A   UAUCUUGUG       CAUCAUAU CAU   UAUG AUCAU CAUCUC     G   ||| |||  |   |||||||||       |||||||| |||   |||| ||||| ||||||   GCA GUA  U   GUAGAACAC       GUGGUGUA GUG   GUGC UAGUA GUAGAG     G CA   G   GU GAC         --CAACC        -   AAC    -     -      AGCCA
Stem-loop sequence	CGUGUAUUGAAAUAUCUUGUGCUACUUUCAUCAUAUUCAUACAUAUGCAUCAUGCAUCUCAUUUAGGACCGAGAGAUGAUGAUCGUGCAAGUGAUGUGGUGCCAACCACAAGAUGCAGUUGAUGGACGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT064754.2	ncRNA:24   CAGCAGGUAGUUGACGUAGAACAC   1   ||||||||*||||||||||||||| targets:299   GUCGUCCACCAACUGCAUCUUGUG   322 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0114E08 mRNA, complete cds	NA	coding protein	psRNATarget
BT087580.2	ncRNA:24   CAGCAGGUAGUUGACGUAGAACAC   1   ||||||||*||||||||||||||| targets:327   GUCGUCCACCAACUGCAUCUUGUG   350 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0119F12 mRNA, complete cds	NA	coding protein	psRNATarget
BT069691.2	ncRNA:24   CAGCAGGUAGUUGACGUAGAACAC   1   ||||||||*||||||||||||||| targets:439   GUCGUCCACCAACUGCAUCUUGUG   462 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0220C01 mRNA, complete cds	NA	coding protein	psRNATarget
BT064832.2	ncRNA:24   CA-GCAGGUAGUUGACGUAGAACAC   1   ||-||||||*||||||||||||||| targets:410   GUACGUCCACCAACUGCAUCUUGUG   434 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0196F11 mRNA, complete cds	NA	coding protein	psRNATarget
BT070186.2	ncRNA:24   CA-GCAGGUAGUUGACGUAGAACAC   1   ||-||||||*||||||||||||||| targets:326   GUACGUCCACCAACUGCAUCUUGUG   350 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0157K20 mRNA, complete cds	NA	coding protein	psRNATarget
BT068016.3	ncRNA:24   CAGCAGGUAGUUGACGUAGAACAC   1   *|=|||||*||||||||||||||| targets:1318   CUUGUCCAACAACUGCAUCUUGUG   1341 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0020B14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176328.1	ncRNA:24   CAGCAGGUAGUUGACGUAGAACAC   1   ||||||||*||||*|||||||||| targets:469   GUCGUCCACCAACGGCAUCUUGUG   492 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383690 (LOC100383690), mRNA	NA	coding protein	psRNATarget
BT068047.2	ncRNA:24   CAGCAGGUAGUUGACGUAGAACAC   1   ||||||||*||||*|||||||||| targets:469   GUCGUCCACCAACGGCAUCUUGUG   492 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0027A06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196985.1	ncRNA:24   CA-GCAGGUAGUUGACGUAGAACAC   1   ||-||||||*||*|||||||||||| targets:403   GUACGUCCACCAUCUGCAUCUUGUG   427 Target Full Sequence	2.5	Zea mays uncharacterized LOC100502507 (LOC100502507), mRNA	NA	coding protein	psRNATarget
NM_001196985.1	ncRNA:24   CA-GCAGGUAGUUGACGUAGAACAC   1   ||-||||||*||*|||||||||||| targets:551   GUACGUCCACCAUCUGCAUCUUGUG   575 Target Full Sequence	2.5	Zea mays uncharacterized LOC100502507 (LOC100502507), mRNA	NA	coding protein	psRNATarget
BT088387.2	ncRNA:24   CA-GCAGGUAGUUGACGUAGAACAC   1   ||-||||||*||*|||||||||||| targets:403   GUACGUCCACCAUCUGCAUCUUGUG   427 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0170G09 mRNA, complete cds	NA	coding protein	psRNATarget
BT088387.2	ncRNA:24   CA-GCAGGUAGUUGACGUAGAACAC   1   ||-||||||*||*|||||||||||| targets:551   GUACGUCCACCAUCUGCAUCUUGUG   575 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0170G09 mRNA, complete cds	NA	coding protein	psRNATarget
BT083888.1	ncRNA:24   CAGCAGGUAGUUGAC-GUAGAACAC   1   *|***||||||||||-||||||||| targets:1079   AUAAGCCAUCAACUGUCAUCUUGUG   1103 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0051D08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177150.2	ncRNA:24   CAGCAGGUAGUUGAC-GUAGAACAC   1   *|***||||||||||-||||||||| targets:1230   AUAAGCCAUCAACUGUCAUCUUGUG   1254 Target Full Sequence	3.0	Zea mays hypothetical protein (umc1687), mRNA	NA	coding protein	psRNATarget
BT042757.1	ncRNA:24   CAGCAGGUAGUUGAC-GUAGAACAC   1   *|***||||||||||-||||||||| targets:1247   AUAAGCCAUCAACUGUCAUCUUGUG   1271 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0037D18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148677.1	ncRNA:24   CAGCAGGUAGUUGAC-GUAGAACAC   1   *|***||||||||||-||||||||| targets:1247   AUAAGCCAUCAACUGUCAUCUUGUG   1271 Target Full Sequence	3.0	Zea mays hypothetical protein (umc1687), mRNA	NA	coding protein	psRNATarget
BT038498.1	ncRNA:24   CAGCAGGUAGUUGACGUAGAACAC   1   **=|*=|||||*|||||||||||| targets:569   CAUGAUCAUCAUCUGCAUCUUGUG   592 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0280H08 mRNA, complete cds	NA	coding protein	psRNATarget