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BaseInfo

ncRNA ID	novel_zma_miR10535
Species	Zea mays
Class	miRNA
Genome position	Chr1:6122348-6122414 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	24
Mature sequence(if miRNA)	44 - GUAGCGGGAGAGGUCGUCGACGAG - 67
Stem-loop(if miRNA)	--    C  A         UU     -CAA  ACC   CGUU GC GCCUCUCCC  GCUAC    GG   A   |||| || |||||||||  |||||    ||   GCAG UG UGGAGAGGG  CGAUG    CC   U GA    C  C         --     UACA  CAC
Stem-loop sequence	CGUUCGCAGCCUCUCCCUUGCUACCAAGGACCAUCACCCACAUGUAGCGGGAGAGGUCGUCGACGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020538918.1	ncRNA:24   GAGCAGCUGCUGGAGAGGGCGAUG   1   |||||||||||||||||||||||| targets:1225   CUCGUCGACGACCUCUCCCGCUAC   1248 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100280126 (LOC100280126), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JN815079.1	ncRNA:24   GAGCAGCUGCUGGAGAGGGCGAUG   1   |***|||==||||||||||||||| targets:730   CAGUUCGGUGACCUCUCCCGCUAC   753 Target Full Sequence	2.0	Zea mays cultivar miniature1-1 flavin monooxygenase (yuc) mRNA, complete cds	NA	coding protein	psRNATarget
JX974334.1	ncRNA:24   GAGCAGCUGCUGGAGAGGGCGAUG   1   |***|||==||||||||||||||| targets:769   CAGUUCGGUGACCUCUCCCGCUAC   792 Target Full Sequence	2.0	Zea mays cultivar defective endosperm 18 mutant Yuc1 protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112521.1	ncRNA:24   GAGCAGCUGCUGGAGAGGGCGAUG   1   |***|||==||||||||||||||| targets:793   CAGUUCGGUGACCUCUCCCGCUAC   816 Target Full Sequence	2.0	Zea mays flavin monooxygenase (yuc), mRNA	NA	coding protein	psRNATarget
DQ995287.1	ncRNA:24   GAGCAGCUGCUGGAGAGGGCGAUG   1   |***|||==||||||||||||||| targets:793   CAGUUCGGUGACCUCUCCCGCUAC   816 Target Full Sequence	2.0	Zea mays flavin monooxygenase (yuc) mRNA, complete cds	NA	coding protein	psRNATarget
EU952470.1	ncRNA:24   GAGCAGCUGCUGGAGAGGGCGAUG   1   |***|||==||||||||||||||| targets:798   CAGUUCGGUGACCUCUCCCGCUAC   821 Target Full Sequence	2.0	Zea mays clone 1281531 disulfide oxidoreductase/ monooxygenase/ oxidoreductase mRNA, complete cds	NA	coding protein	psRNATarget
BT016604.1	ncRNA:24   GAGCAGCUGCUGGAGAGGGCGAUG   1   |***|||==||||||||||||||| targets:787   CAGUUCGGUGACCUCUCCCGCUAC   810 Target Full Sequence	2.0	Zea mays clone Contig437 mRNA sequence	NA	coding protein	psRNATarget
BT041564.1	ncRNA:24   GAGCAGCUGCUGGAGAGGGCGAUG   1   *****||=||||||||||||||=| targets:496   GCGCACGGCGACCUCUCCCGCUGC   519 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0006B15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148064.1	ncRNA:24   GAGCAGCUGCUGGAGAGGGCGAUG   1   *****||=||||||||||||||=| targets:496   GCGCACGGCGACCUCUCCCGCUGC   519 Target Full Sequence	2.5	Zea mays putative carboxylesterase 8 (LOC100273650), mRNA	NA	coding protein	psRNATarget
EU968982.1	ncRNA:24   GAGCAGCUGCUGGAGAGGGCGAUG   1   *****||=||||||||||||||=| targets:545   GCGCACGGCGACCUCUCCCGCUGC   568 Target Full Sequence	2.5	Zea mays clone 325361 mRNA sequence	NA	coding protein	psRNATarget