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BaseInfo

ncRNA ID novel_zma_miR10524
Species Zea mays
Class miRNA
Genome position Chr1:19226100-19226164 [-]
Reference genome RefGen_v4
Source SRR5100248
Length 20
Mature sequence(if miRNA) 46 - AUUGGAGAGGCUAGAAUCUC - 65
Stem-loop(if miRNA) --    G  A  C      -    -  U     A
  AUUG AG GG UAGAAU CUCU CU AUUUA A
  |||| || || |||||| |||| || |||||
  UAAC UC CC AUCUUA GGGA GA UAAGU A
CC    A  -  A      A    A  U     U
Stem-loop sequence AUUGGAGAGGCUAGAAUCUCUCUUAUUUAAAAUUGAAUUAGAAGGGAAUUCUAACCCUACAAUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ074100.1
ncRNA:20   CUCUAAGAUCGGAGAGGUUA   1
  |=||||||||||*|||||||
targets:211   GGGAUUCUAGCCCCUCCAAU   230

2.5 TSA: Zea mays contig09737, mRNA sequence NA coding protein psRNATarget
EU943186.1
ncRNA:20   CUCUAAGAUCGGAGAGGUUA   1
  ||||||=|||*|||||||||
targets:1137   GAGAUUUUAGGCUCUCCAAU   1156

2.5 Zea mays clone 1582065 mRNA sequence NA coding protein psRNATarget