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BaseInfo

ncRNA ID	novel_zma_miR10509
Species	Zea mays
Class	miRNA
Genome position	Chr1:74006520-74006600 [-]
Reference genome	RefGen_v4
Source	SRR5100248
Length	24
Mature sequence(if miRNA)	58 - AGUAUGUGUAGAAACCUAGCCGGU - 81
Stem-loop(if miRNA)	-- G                 CC GU      -     - U   A UAUGUGUAGAAACCUAG  G  CUACAU UGAAA C U   | |||||||||||||||||  |  |||||| ||||| | U   U AUACACAUCUUUGGAUU  C  GAUGUG ACUUU G A CG G                 CA UG      U     A U
Stem-loop sequence	AGUAUGUGUAGAAACCUAGCCGGUCUACAUUGAAACUUUAUGAUUUCAUGUGUAGGUCACUUAGGUUUCUACACAUAGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163670.1	ncRNA:24   UGGCCGAUCCAAAGAUGUGUAUGA   1   *=|**|||||||||||||||||*| targets:143   UUCUCCUAGGUUUCUACACAUAGU   166 Target Full Sequence	1.5	Sequence 1334 from Patent EP2559767	NA	coding protein	psRNATarget
HI403209.1	ncRNA:24   UGGCCGAUCCAAAGAUGUGUAUGA   1   *=|**|||||||||||||||||*| targets:143   UUCUCCUAGGUUUCUACACAUAGU   166 Target Full Sequence	1.5	Sequence 1334 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235339.1	ncRNA:24   UGGCCGAUCCAAAGAUGUGUAUGA   1   *=|**|||||||||||||||||*| targets:143   UUCUCCUAGGUUUCUACACAUAGU   166 Target Full Sequence	1.5	Sequence 1334 from Patent EP2985353	NA	coding protein	psRNATarget
HI410095.1	ncRNA:24   UGGCCGAUCCAAAGAUGUGUAUGA   1   *=|**=||||||||||||||||*| targets:66   UUCUCUUAGGUUUCUACACAUAGU   89 Target Full Sequence	2.5	Sequence 8220 from Patent EP2074227	NA	coding protein	psRNATarget
JB170556.1	ncRNA:24   UGGCCGAUCCAAAGAUGUGUAUGA   1   *=|**=||||||||||||||||*| targets:66   UUCUCUUAGGUUUCUACACAUAGU   89 Target Full Sequence	2.5	Sequence 8220 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242225.1	ncRNA:24   UGGCCGAUCCAAAGAUGUGUAUGA   1   *=|**=||||||||||||||||*| targets:66   UUCUCUUAGGUUUCUACACAUAGU   89 Target Full Sequence	2.5	Sequence 8220 from Patent EP2985353	NA	coding protein	psRNATarget
HI403202.1	ncRNA:24   UGGCCGAUCCAAAGAUGUGUAUGA   1   *=|**=||||||||||||||||*| targets:67   UUCUCUUAGGUUUCUACACAUAAU   90 Target Full Sequence	2.5	Sequence 1327 from Patent EP2074227	NA	coding protein	psRNATarget
JB163663.1	ncRNA:24   UGGCCGAUCCAAAGAUGUGUAUGA   1   *=|**=||||||||||||||||*| targets:67   UUCUCUUAGGUUUCUACACAUAAU   90 Target Full Sequence	2.5	Sequence 1327 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235332.1	ncRNA:24   UGGCCGAUCCAAAGAUGUGUAUGA   1   *=|**=||||||||||||||||*| targets:67   UUCUCUUAGGUUUCUACACAUAAU   90 Target Full Sequence	2.5	Sequence 1327 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235098.1	ncRNA:24   UGGCCGAUCCAAAGAUGUGUAUGA   1   *=|**=||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAGU   92 Target Full Sequence	2.5	Sequence 1093 from Patent EP2985353	NA	coding protein	psRNATarget
JB163429.1	ncRNA:24   UGGCCGAUCCAAAGAUGUGUAUGA   1   *=|**=||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAGU   92 Target Full Sequence	2.5	Sequence 1093 from Patent EP2559767	NA	coding protein	psRNATarget
HI402968.1	ncRNA:24   UGGCCGAUCCAAAGAUGUGUAUGA   1   *=|**=||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAGU   92 Target Full Sequence	2.5	Sequence 1093 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:24   UGGCCGAUCCAAAGAUGUGUAUGA   1   *==**=||||||||||||||||*| targets:137   UUUUCUUAGGUUUCUACACAUAGU   160 Target Full Sequence	2.5	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
HI403222.1	ncRNA:24   UGGCCGAUCCAAAGAUGUGUAUGA   1   *==**=||||||||||||||||*| targets:137   UUUUCUUAGGUUUCUACACAUAGU   160 Target Full Sequence	2.5	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
JB163683.1	ncRNA:24   UGGCCGAUCCAAAGAUGUGUAUGA   1   *==**=||||||||||||||||*| targets:137   UUUUCUUAGGUUUCUACACAUAGU   160 Target Full Sequence	2.5	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
EU964540.1	ncRNA:24   UGGCCGAUCCAAAGAUGUGUAUGA   1   =*|**||||*||||||||||||=| targets:1093   GACAUCUAGCUUUCUACACAUAUU   1116 Target Full Sequence	2.5	Zea mays clone 279735 AT hook motif family protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001254835.1	ncRNA:24   UGGCCGAUCCAAAGAUGUGUAUGA   1   =*|**||||*||||||||||||=| targets:1093   GACAUCUAGCUUUCUACACAUAUU   1116 Target Full Sequence	2.5	Zea mays AT hook motif family protein (LOC100856949), mRNA	NA	coding protein	psRNATarget