ncRNA ID | novel_zma_miR10502 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr1:84335650-84335861 [-] |
Reference genome | RefGen_v4 |
Source | SRR5100248 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AAUUGAUUUUAGUCUCUAGUCCCU - 24 |
Stem-loop(if miRNA) |
--      A        -   UU       A            AG            A          AG    U                UC     UCCCUCUAA   GGACUA AGACUAAA UCA  UUAGUCC UAUUUUAGUCCU  UGUUUGGCAAAA AGGGACUAAA  GGAC AAAAACUAGAGACUAA  UUUAG         C   |||||| |||||||| |||  ||||||| ||||||||||||  |||||||||||| ||||||||||  |||| ||||||||||||||||  |||||   CCUGAU UCUGAUUU AGU  AAUCAGG AUGAAAUUAGGA  GUAAACCGUUUU UCUCUGAUUU  UCUG UUUUUGGUCUCUGAUU  GAAUC         C UC      C        U   -U       G            AG            A          GU    U                UC     CCCCACAAA |
Stem-loop sequence | GGACUAAAGACUAAAUCAUUUUAGUCCAUAUUUUAGUCCUAGUGUUUGGCAAAAAAGGGACUAAAAGGGACUAAAAACUAGAGACUAAUCUUUAGUCCCUCUAACCAAACACCCCCUAAGCUUUAGUCUCUGGUUUUUUGUCUUGUUUAGUCUCUAUUUUGCCAAAUGGAAGGAUUAAAGUAGGGACUAAUUGAUUUUAGUCUCUAGUCCCU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EZ099564.1 |
|
1.5 | TSA: Zea mays contig35219, mRNA sequence | NA | coding protein | psRNATarget |