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BaseInfo

ncRNA ID novel_zma_miR10502
Species Zea mays
Class miRNA
Genome position Chr1:84335650-84335861 [-]
Reference genome RefGen_v4
Source SRR5100248
Length 24
Mature sequence(if miRNA) 1 - AAUUGAUUUUAGUCUCUAGUCCCU - 24
Stem-loop(if miRNA) --      A        -   UU       A            AG            A          AG    U                UC     UCCCUCUAA
  GGACUA AGACUAAA UCA  UUAGUCC UAUUUUAGUCCU  UGUUUGGCAAAA AGGGACUAAA  GGAC AAAAACUAGAGACUAA  UUUAG         C
  |||||| |||||||| |||  ||||||| ||||||||||||  |||||||||||| ||||||||||  |||| ||||||||||||||||  |||||
  CCUGAU UCUGAUUU AGU  AAUCAGG AUGAAAUUAGGA  GUAAACCGUUUU UCUCUGAUUU  UCUG UUUUUGGUCUCUGAUU  GAAUC         C
UC      C        U   -U       G            AG            A          GU    U                UC     CCCCACAAA
Stem-loop sequence GGACUAAAGACUAAAUCAUUUUAGUCCAUAUUUUAGUCCUAGUGUUUGGCAAAAAAGGGACUAAAAGGGACUAAAAACUAGAGACUAAUCUUUAGUCCCUCUAACCAAACACCCCCUAAGCUUUAGUCUCUGGUUUUUUGUCUUGUUUAGUCUCUAUUUUGCCAAAUGGAAGGAUUAAAGUAGGGACUAAUUGAUUUUAGUCUCUAGUCCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ099564.1
ncRNA:24   UCCCUGAUCUCUGAUUUUAGUUAA   1
  ||*|||||||||||||||*|||||
targets:72   AGUGACUAGAGACUAAAACCAAUU   95

1.5 TSA: Zea mays contig35219, mRNA sequence NA coding protein psRNATarget