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BaseInfo

ncRNA ID	novel_zma_miR10500
Species	Zea mays
Class	miRNA
Genome position	Chr1:91084149-91084227 [-]
Reference genome	RefGen_v4
Source	SRR5100248;SRR5100255
Length	24
Mature sequence(if miRNA)	56 - AAAACACUCGGCAAAGAACUUCUU - 79
Stem-loop(if miRNA)	--                 A   C             UU   AAAACACUCGGCAAAGA CUU UUUGUCGAGUGUU  U   ||||||||||||||||| ||| |||||||||||||  U   UUUUGUGAGCUGUUUCU GAA AAACGGCUCACAG  U UU                 C   U             CU
Stem-loop sequence	AAAACACUCGGCAAAGAACUUCUUUGUCGAGUGUUUUUUUUCGACACUCGGCAAAUAAGCUCUUUGUCGAGUGUUUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008672265.2	ncRNA:24   UUCUUCAAGAAACGGCUCACAAAA   1   ||*||||||||||=|||||||||| targets:429   AAAAAGUUCUUUGUCGAGUGUUUU   452 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672266.2	ncRNA:24   UUCUUCAAGAAACGGCUCACAAAA   1   ||*||||||||||=|||||||||| targets:681   AAAAAGUUCUUUGUCGAGUGUUUU   704 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU949560.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAAA   1   |||=-||||||||||||||||||| targets:588   AAGG-GUUCUUUGCCGAGUGUUUU   610 Target Full Sequence	0.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAAA   1   ||||-|*||||||||||||||||| targets:103   AAGA-GCUCUUUGCCGAGUGUUUU   125 Target Full Sequence	1.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAAA   1   ||||-|*||||||||||||||||| targets:103   AAGA-GCUCUUUGCCGAGUGUUUU   125 Target Full Sequence	1.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAAA   1   ||||-|*||||||||||||||||| targets:103   AAGA-GCUCUUUGCCGAGUGUUUU   125 Target Full Sequence	1.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAAA   1   ||||-|*|||||||||||||||*| targets:1983   AAGA-GCUCUUUGCCGAGUGUUGU   2005 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAAA   1   ||||-|*|||||||||||||||*| targets:1983   AAGA-GCUCUUUGCCGAGUGUUGU   2005 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
JB169026.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAAA   1   ***|=|||||||||||||||||*| targets:1   CUUAGGUUCUUUGCCGAGUGUUAU   24 Target Full Sequence	1.5	Sequence 6690 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240695.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAAA   1   ***|=|||||||||||||||||*| targets:1   CUUAGGUUCUUUGCCGAGUGUUAU   24 Target Full Sequence	1.5	Sequence 6690 from Patent EP2985353	NA	coding protein	psRNATarget
HI408565.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAAA   1   ***|=|||||||||||||||||*| targets:1   CUUAGGUUCUUUGCCGAGUGUUAU   24 Target Full Sequence	1.5	Sequence 6690 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008680068.2	ncRNA:24   UUCUUC--AAGAAACGGCUCACAAAA   1   =**=||--|||||||||||||||||| targets:190   GUCGAGCCUUCUUUGCCGAGUGUUUU   215 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103653106 (LOC103653106), mRNA	NA	coding protein	psRNATarget
BT042352.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAAA   1   =**|**|||||||||||*|||||| targets:1218   GUCAUAUUCUUUGCCGAUUGUUUU   1241 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148473.2	ncRNA:24   UUCUUCAAGAAACGGCUCACAAAA   1   =**|**|||||||||||*|||||| targets:1268   GUCAUAUUCUUUGCCGAUUGUUUU   1291 Target Full Sequence	2.5	Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA	NA	coding protein	psRNATarget