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BaseInfo

ncRNA ID novel_zma_miR10490
Species Zea mays
Class miRNA
Genome position Chr1:49991394-49991510 [+]
Reference genome RefGen_v4
Source SRR5100248
Length 21
Mature sequence(if miRNA) 97 - UUUGGACUUCCAAACUAGCCC - 117
Stem-loop(if miRNA) --        AA   -   C             ---------C       CC  CC       A
  GCUAGUUU  GAG CCA AAAAUCGGAGGGG          UAAGAUC  CU  UUAUUCA A
  ||||||||  ||| ||| |||||||||||||          |||||||  ||  |||||||
  CGAUCAAA  UUC GGU UUUUGGCUUCCCC          AUUUUAG  GA  AAUAAGU A
CC        CC   A   -             UAAUCUCCCU       AA  AA       U
Stem-loop sequence GCUAGUUUAAGAGCCACAAAAUCGGAGGGGCUAAGAUCCCCUCCUUAUUCAAAAUUGAAUAAAAAGAAGAUUUUAUCCCUCUAAUCCCCUUCGGUUUUUGGACUUCCAAACUAGCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU956908.1
ncRNA:21   CCCGAUCAAACCUUCAGGUUU   1
  ||||||||||||||||=||||
targets:979   GGGCUAGUUUGGAAGUUCAAA   999

1.5 Zea mays clone 1577150 mRNA sequence NA coding protein psRNATarget
EU956908.1
ncRNA:21   CCCGAUCAAACCUUCAGGUUU   1
  *||||||||||||||||||||
targets:942   CGGCUAGUUUGGAAGUCCAAA   962

0.0 Zea mays clone 1577150 mRNA sequence NA coding protein psRNATarget
EU948109.1
ncRNA:21   CCCGAUCAAACCUUCAGGUUU   1
  *||||||*|||||=|||||||
targets:425   UGGCUAGAUUGGAGGUCCAAA   445

2.5 Zea mays clone 369930 mRNA sequence NA coding protein psRNATarget
EZ102707.1
ncRNA:21   CCCGAUCAAACCUUCAGGUUU   1
  ***||=|||||||||||||||
targets:92   AUACUGGUUUGGAAGUCCAAA   112

2.0 TSA: Zea mays contig38363, mRNA sequence NA coding protein psRNATarget
EZ070747.1
ncRNA:21   CCCGAUCAAACCUUCAGGUUU   1
  ***||=|||||||||||||||
targets:229   CUACUGGUUUGGAAGUCCAAA   249

2.0 TSA: Zea mays contig06384, mRNA sequence NA coding protein psRNATarget
BT023982.1
ncRNA:21   CCCGAUCAAACCUUCAGGUUU   1
  ***||=|||||||||||||||
targets:776   CUACUGGUUUGGAAGUCCAAA   796

2.0 Zea mays clone EL01N0414A03 mRNA sequence NA coding protein psRNATarget
AY104195.1
ncRNA:21   CCCGAUCAAACCUUCAGGUUU   1
  ***||=|||||||||||||||
targets:843   CUACUGGUUUGGAAGUCCAAA   863

2.0 Zea mays PCO094435 mRNA sequence NA coding protein psRNATarget
BT067761.1
ncRNA:21   CCCGAUCAAACCUUCAGGUUU   1
  ***||=|||||||||||||||
targets:1178   CUACUGGUUUGGAAGUCCAAA   1198

2.0 Zea mays full-length cDNA clone ZM_BFc0153O18 mRNA, complete cds NA coding protein psRNATarget
NM_001158298.1
ncRNA:21   CCCGAUCAAACCUUCAGGUUU   1
  ***||=|||||||||||||||
targets:1248   AUACUGGUUUGGAAGUCCAAA   1268

2.0 Zea mays endo-1,4-beta-glucanase Cel1 (LOC100285405), mRNA NA coding protein psRNATarget
EU972148.1
ncRNA:21   CCCGAUCAAACCUUCAGGUUU   1
  ***||=|||||||||||||||
targets:1248   AUACUGGUUUGGAAGUCCAAA   1268

2.0 Zea mays clone 376281 endo-1,4-beta-glucanase Cel1 mRNA, complete cds NA coding protein psRNATarget
NM_001349894.1
ncRNA:21   CCCGAUCAAACCUUCAGGUUU   1
  ***||=|||||||||||||||
targets:1331   CUACUGGUUUGGAAGUCCAAA   1351

2.0 Zea mays uncharacterized LOC100274698 (gpm617), mRNA NA coding protein psRNATarget
BT063880.1
ncRNA:21   CCCGAUCAAACCUUCAGGUUU   1
  ***||=|||||||||||||||
targets:1331   CUACUGGUUUGGAAGUCCAAA   1351

2.0 Zea mays full-length cDNA clone ZM_BFc0115N20 mRNA, complete cds NA coding protein psRNATarget
XM_008672691.2
ncRNA:21   CCCGAUCAAACCUUCAGGUUU   1
  ||*|||*|||||||||||||*
targets:1877   GGACUACUUUGGAAGUCCAAC   1897

3.0 PREDICTED: Zea mays Protein RETICULATA chloroplastic (LOC103648205), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008672692.2
ncRNA:21   CCCGAUCAAACCUUCAGGUUU   1
  ||*|||*|||||||||||||*
targets:1893   GGACUACUUUGGAAGUCCAAC   1913

3.0 PREDICTED: Zea mays Protein RETICULATA chloroplastic (LOC103648205), transcript variant X2, mRNA NA coding protein psRNATarget
EU951986.1
ncRNA:21   CCCGAUCAAACCUUCAGGUUU   1
  ***||||||||||*|||||||
targets:855   UUACUAGUUUGGAUGUCCAAA   875

2.5 Zea mays clone 1064464 polcalcin Jun o 2 mRNA, complete cds NA coding protein psRNATarget
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