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BaseInfo

ncRNA ID novel_zma_miR10483
Species Zea mays
Class miRNA
Genome position Chr1:141626603-141626651 [-]
Reference genome RefGen_v4
Source SRR5100248
Length 21
Mature sequence(if miRNA) 1 - UUACCGAGAGUAGGACUUUGU - 21
Stem-loop(if miRNA) --                   A  U
  AGAGUCCUGCUCUCGGUGA CG G
  ||||||||||||||||||| ||
  UUUCAGGAUGAGAGCCAUU GU U
UG                   -  U
Stem-loop sequence AGAGUCCUGCUCUCGGUGAACGUGUUUGUUACCGAGAGUAGGACUUUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI409737.1
ncRNA:21   UGUUUCAGGAUGAGAGCCAUU   1
  =||*|||||||||||||||||
targets:6   GCAUAGUCCUACUCUCGGUAA   26

1.0 Sequence 7862 from Patent EP2074227 NA coding protein psRNATarget
JB170198.1
ncRNA:21   UGUUUCAGGAUGAGAGCCAUU   1
  =||*|||||||||||||||||
targets:6   GCAUAGUCCUACUCUCGGUAA   26

1.0 Sequence 7862 from Patent EP2559767 NA coding protein psRNATarget
LQ241867.1
ncRNA:21   UGUUUCAGGAUGAGAGCCAUU   1
  =||*|||||||||||||||||
targets:6   GCAUAGUCCUACUCUCGGUAA   26

1.0 Sequence 7862 from Patent EP2985353 NA coding protein psRNATarget
XM_008671736.2
ncRNA:21   UGUUUCAGGAUGAGAGCCAUU   1
  **|=|||||||||||||||||
targets:210   UGAGAGUCCUACUCUCGGUAA   230

1.0 PREDICTED: Zea mays probable serine/threonine-protein kinase PBL28 (LOC103647166), mRNA NA coding protein psRNATarget