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BaseInfo

ncRNA ID novel_zma_miR10464
Species Zea mays
Class miRNA
Genome position Chr1:220758714-220758833 [-]
Reference genome RefGen_v4
Source SRR5100248
Length 24
Mature sequence(if miRNA) 1 - AGCACUUGAAGAAACAAACUGGCC - 24
Stem-loop(if miRNA) -C   -                      C      --C   -CUG  ---A    G      A
  CCA UUUGUUUCUUCAAGUGCUAAAG UUAGCA   CUU    AG    UAAA UUUAGC C
  ||| |||||||||||||||||||||| ||||||   |||    ||    |||| ||||||
  GGU AAACAAAGAAGUUCACGAUUUC AAUCGU   GAA    UC    AUUU AAAUCG A
CC   C                      A      UUU   AUUA  CACG    G      U
Stem-loop sequence CCCAUUUGUUUCUUCAAGUGCUAAAGCUUAGCACCUUCUGAGAUAAAGUUUAGCACAUGCUAAAGUUUAGCACCUAUUAAAGUUUUGCUAAACUUUAGCACUUGAAGAAACAAACUGGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ108454.1
ncRNA:24   CCGGUCAAACAAAGAAGUUCACGA   1
  ***|=||||*||||||||*|||||
targets:9   UUGCGGUUUUUUUCUUCAUGUGCU   32

2.5 TSA: Zea mays contig44113, mRNA sequence NA coding protein psRNATarget