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BaseInfo

ncRNA ID novel_zma_miR10441
Species Zea mays
Class miRNA
Genome position Chr1:268242646-268242720 [-]
Reference genome RefGen_v4
Source SRR5100248;SRR5100255
Length 24
Mature sequence(if miRNA) 52 - AAACUGUAACGCCCUGAAUUUGGG - 75
Stem-loop(if miRNA) -AAACU        C         -   U    UUUUU
      GUAACGCC UGAAUUUGG GGG AGAA     U
      |||||||| ||||||||| ||| ||||     U
      CAUUGCGG ACUUAAACC CUC UCUU     C
CUUUCU        -         A   -    UUCUU
Stem-loop sequence AAACUGUAACGCCCUGAAUUUGGGGGUAGAAUUUUUUUCUUCUUUUCUCUCACCAAAUUCAGGCGUUACUCUUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020539096.1
ncRNA:24   GGGUUUAAGUCCCGCAAUGUCAAA   1
  |**|=|||||*||||||||||*||
targets:788   CAGAGAUUCAUGGCGUUACAGAUU   811

2.5 PREDICTED: Zea mays AP3-complex subunit beta-A (LOC100383432), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001351147.1
ncRNA:24   GGGUUUAAGUCCCGCAAUGUCAAA   1
  |**|=|||||*||||||||||*||
targets:966   CAGAGAUUCAUGGCGUUACAGAUU   989

2.5 Zea mays AP3-complex subunit beta-A (LOC100383432), mRNA NA coding protein psRNATarget