Search result

BaseInfo

ncRNA ID novel_zma_miR10436
Species Zea mays
Class miRNA
Genome position Chr1:289329292-289329346 [-]
Reference genome RefGen_v4
Source SRR5100248;SRR5100255
Length 24
Mature sequence(if miRNA) 32 - CCCAACUGUUAGGGUUCUGAUGGU - 55
Stem-loop(if miRNA) --     -C           UG     U
  CCCAA  UGUUAGGGUUC  AUGGU U
  |||||  |||||||||||  |||||
  GGGUU  ACAGUCUCGAG  UGCCA A
AU     CU           GU     G
Stem-loop sequence CCCAACUGUUAGGGUUCUGAUGGUUUAGACCGUUGGAGCUCUGACAUCUUGGGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008650945.1
ncRNA:24   UGGU--AGUCUUGGGAUUGUCAACCC   1
  *|||--||*||||||||||=||||||
targets:1025   CCCAGCUCCGAACCCUAACGGUUGGG   1050

2.5 PREDICTED: Zea mays uncharacterized LOC103629851 (LOC103629851), mRNA NA coding protein psRNATarget
EU952069.1
ncRNA:24   UGGU--AGUCUUGGGAUUGUCAACCC   1
  *|||--||*||||||||||=||||||
targets:1033   CCCAGCUCCGAACCCUAACGGUUGGG   1058

2.5 Zea mays clone 1155789 hypothetical protein mRNA, complete cds NA coding protein psRNATarget