ncRNA ID | ath-miRf10112-npr |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | PNRD |
Length | 20 |
Mature sequence(if miRNA) | NA - UCCUGAGUUUCAUUGGCUCU - NA |
Stem-loop(if miRNA) |
    --      AU U  A          G           --U   -   C  A GUAG  AGAAGA  C GU AAGCUCAGGA GGAUAGCGCCA   GAU GAU AC U ||||  ||||||  | || |||||||||| |||||||||||   ||| ||| || CAUC  UCUUCU  G UA UUUGAGUCCU CCUAUCGCGGU   UUA CUA UG U     AU      CG U  C          A           UUU   U   U  C |
Stem-loop sequence | GUAGAGAAGAAUCUGUAAAGCUCAGGAGGGAUAGCGCCAUGAUGAUCACAUUCGUUAUCUAUUUUUUGGCGCUAUCCAUCCUGAGUUUCAUUGGCUCUUCUUACUAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_001339353.1 |
|
3.0 | Arabidopsis thaliana Serine/Threonine-kinase ATM partial mRNA | Serine/Threonine-kinase ATM(AT3G48187) | coding protein | psRNATarget | |||||||||
AJ250248.1 |
|
3.0 | Arabidopsis thaliana mRNA for ataxia-telangiectasia mutated protein (atm gene), strain Columbia | NA | coding protein | psRNATarget |