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BaseInfo

ncRNA ID novel_zma_miR10429
Species Zea mays
Class miRNA
Genome position Chr1:298922364-298922416 [+]
Reference genome RefGen_v4
Source SRR5100248
Length 24
Mature sequence(if miRNA) 30 - UGGCACUCGGCAAAGAACCUGACA - 53
Stem-loop(if miRNA) -UA                   AAUG
   UAGGUUCUUUGCCGAGUGU    U
   |||||||||||||||||||
   GUCCAAGAAACGGCUCACG    C
ACA                   GUCU
Stem-loop sequence UAUAGGUUCUUUGCCGAGUGUAAUGUCUCUGGCACUCGGCAAAGAACCUGACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ241915.1
ncRNA:24   ACAGUCCAAGAAACGGCUCACGGU   1
  |||*||||||||||||||||||=|
targets:75   UGUGAGGUUCUUUGCCGAGUGCUA   98

1.5 Sequence 7910 from Patent EP2985353 NA coding protein psRNATarget
HI409785.1
ncRNA:24   ACAGUCCAAGAAACGGCUCACGGU   1
  |||*||||||||||||||||||=|
targets:75   UGUGAGGUUCUUUGCCGAGUGCUA   98

1.5 Sequence 7910 from Patent EP2074227 NA coding protein psRNATarget
JB170246.1
ncRNA:24   ACAGUCCAAGAAACGGCUCACGGU   1
  |||*||||||||||||||||||=|
targets:75   UGUGAGGUUCUUUGCCGAGUGCUA   98

1.5 Sequence 7910 from Patent EP2559767 NA coding protein psRNATarget
EZ087925.1
ncRNA:24   ACAGUCCAAGAAACGGCUCACGGU   1
  |||==|*||||||||||||||||*
targets:47   UGUUGGCUUCUUUGCCGAGUGCCU   70

2.0 TSA: Zea mays contig23571, mRNA sequence NA coding protein psRNATarget
BT067215.1
ncRNA:24   ACAGUCCAAGAAACGGCUCACGGU   1
  |||==|*||||||||||||||||*
targets:1146   UGUUGGCUUCUUUGCCGAGUGCCU   1169

2.0 Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds NA coding protein psRNATarget
BT064046.1
ncRNA:24   ACAGUCCAAGAAACGGCUCACGGU   1
  |||==|*||||||||||||||||*
targets:1283   UGUUGGCUUCUUUGCCGAGUGCCU   1306

2.0 Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds NA coding protein psRNATarget
NM_001175109.1
ncRNA:24   ACAGUCCAAGAAACGGCUCACGGU   1
  |||==|*||||||||||||||||*
targets:1283   UGUUGGCUUCUUUGCCGAGUGCCU   1306

2.0 Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA NA coding protein psRNATarget
LQ238769.1
ncRNA:24   ACAGUCCAAGAAACGGCUCACGGU   1
  *||--|*|||||||||||||||||
targets:164   CGU--GCUUCUUUGCCGAGUGCCA   185

1.0 Sequence 4764 from Patent EP2985353 NA coding protein psRNATarget
JB167100.1
ncRNA:24   ACAGUCCAAGAAACGGCUCACGGU   1
  *||--|*|||||||||||||||||
targets:164   CGU--GCUUCUUUGCCGAGUGCCA   185

1.0 Sequence 4764 from Patent EP2559767 NA coding protein psRNATarget
HI406639.1
ncRNA:24   ACAGUCCAAGAAACGGCUCACGGU   1
  *||--|*|||||||||||||||||
targets:164   CGU--GCUUCUUUGCCGAGUGCCA   185

1.0 Sequence 4764 from Patent EP2074227 NA coding protein psRNATarget
HI406962.1
ncRNA:24   ACAGUCC-AAGAAACGGCUCACGGU   1
  ****|||-||||||||||||||||=
targets:11   AAAGAGGCUUCUUUGCCGAGUGCCG   35

3.0 Sequence 5087 from Patent EP2074227 NA coding protein psRNATarget
LQ239092.1
ncRNA:24   ACAGUCC-AAGAAACGGCUCACGGU   1
  ****|||-||||||||||||||||=
targets:11   AAAGAGGCUUCUUUGCCGAGUGCCG   35

3.0 Sequence 5087 from Patent EP2985353 NA coding protein psRNATarget
JB167423.1
ncRNA:24   ACAGUCC-AAGAAACGGCUCACGGU   1
  ****|||-||||||||||||||||=
targets:11   AAAGAGGCUUCUUUGCCGAGUGCCG   35

3.0 Sequence 5087 from Patent EP2559767 NA coding protein psRNATarget
EU962802.1
ncRNA:24   ACAGUCC-AAGAAACGGCUCACGGU   1
  ****|||-|||||||||||||||||
targets:1094   AAAGAGGCUUCUUUGCCGAGUGCCA   1118

2.0 Zea mays clone 245661 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU962802.1
ncRNA:24   ACAGUCCAAGAAACGGCUCACGGU   1
  **||*||**||||||||||||||=
targets:820   AAUCCGGGACUUUGCCGAGUGCCG   843

3.0 Zea mays clone 245661 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
AY104931.1
ncRNA:24   ACAGUCCAAGAAACGGCUCACGGU   1
  **|=*||*|||||||=||||||||
targets:830   AAUUUGGCUCUUUGCUGAGUGCCA   853

2.5 Zea mays PCO092603 mRNA sequence NA coding protein psRNATarget
BT035133.1
ncRNA:24   ACAGUCCAAGAAACGGCUCACGGU   1
  **||-||*|||||||||||||=||
targets:1293   AUUC-GGCUCUUUGCCGAGUGUCA   1315

2.5 Zea mays full-length cDNA clone ZM_BFb0041G19 mRNA, complete cds NA coding protein psRNATarget
NM_001138164.1
ncRNA:24   ACAGUCCAAGAAACGGCUCACGGU   1
  **||-||*|||||||||||||=||
targets:1293   AUUC-GGCUCUUUGCCGAGUGUCA   1315

2.5 Zea mays OSIGBa0147B06.5 protein (LOC100192993), mRNA NA coding protein psRNATarget
XM_008668897.2
ncRNA:24   ACAGUCCAAGAAACGGCUCACGGU   1
  **||-||*|||||||||||||=||
targets:1241   AUUC-GGCUCUUUGCCGAGUGUCA   1263

2.5 PREDICTED: Zea mays OSIGBa0147B06.5 protein (LOC100192993), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547384.1
ncRNA:24   ACAGUCCAAGAAACGGCUCACGGU   1
  **||-||*|||||||||||||=||
targets:1254   AUUC-GGCUCUUUGCCGAGUGUCA   1276

2.5 PREDICTED: Zea mays OSIGBa0147B06.5 protein (LOC100192993), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001152747.2
ncRNA:24   ACAGUCCAAGAAACGGCUCACGGU   1
  **|=*||*|||||||=||||||||
targets:2376   AAUUUGGCUCUUUGCUGAGUGCCA   2399

2.5 Zea mays ethylene insensitive-like1 (umc1357), mRNA NA coding protein psRNATarget
XM_020543621.1
ncRNA:24   ACAGUCCAAGAAACGGCUCACGGU   1
  **|=*||*|||||||=||||||||
targets:3591   AAUUUGGCUCUUUGCUGAGUGCCA   3614

2.5 PREDICTED: Zea mays ethylene insensitive-like1 (umc1357), transcript variant X1, mRNA NA coding protein psRNATarget
HI409696.1
ncRNA:24   ACAGUCCAAGAAACGGCUCACGGU   1
  ****||**||||||||||||||||
targets:36   AAGAAGCCUCUUUGCCGAGUGCCA   59

2.0 Sequence 7821 from Patent EP2074227 NA coding protein psRNATarget
JB170157.1
ncRNA:24   ACAGUCCAAGAAACGGCUCACGGU   1
  ****||**||||||||||||||||
targets:36   AAGAAGCCUCUUUGCCGAGUGCCA   59

2.0 Sequence 7821 from Patent EP2559767 NA coding protein psRNATarget
LQ241826.1
ncRNA:24   ACAGUCCAAGAAACGGCUCACGGU   1
  ****||**||||||||||||||||
targets:36   AAGAAGCCUCUUUGCCGAGUGCCA   59

2.0 Sequence 7821 from Patent EP2985353 NA coding protein psRNATarget
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