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BaseInfo

ncRNA ID	novel_zma_miR10423
Species	Zea mays
Class	miRNA
Genome position	Chr3:2038988-2039161 [+]
Reference genome	RefGen_v4
Source	SRR5099742;SRR5105961
Length	21
Mature sequence(if miRNA)	154 - UUGGACUGAAGGGUGCUCCCU - 174
Stem-loop(if miRNA)	-GA    GU           CU            UA        ----   G  G   AC        C  CA   C    AAACGG C    GAGC  CCUUCAGUCCA  CAGGGGCGGUGC  GGGUCGAA    UUA CU CCG  UCAUUCAC CA  UGC AAGC      C A    ||||  |||||||||||  ||||||||||||  ||||||||    ||| || |||  |||||||| ||  ||| ||||      |    CUCG  GGAAGUCAGGU  GUUUCUGCCACG  UCUAGCUU    AAU GA GGC  AGUAAGUG GU  ACG UUCG      G U UCC    UG           UC            -C        CGAA   G  G   GA        A  AG   U    ACCAAA G
Stem-loop sequence	GAGAGCGUCCUUCAGUCCACUCAGGGGCGGUGCUAGGGUCGAAUUAGCUGCCGACUCAUUCACCCACAUGCCAAGCAAACGGCCAUGGAAACCAGCUUUGCAGAUGAGUGAAUGAAGCGGGAGGUAAAAGCUUCGAUCUCGCACCGUCUUUGCUUGGACUGAAGGGUGCUCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB169126.1	ncRNA:21   UCCCUCGUGGGAAGUCAGGUU   1   ||||||||||||||||||||| targets:7   AGGGAGCACCCUUCAGUCCAA   27 Target Full Sequence	0.0	Sequence 6790 from Patent EP2559767	NA	coding protein	psRNATarget
HI408665.1	ncRNA:21   UCCCUCGUGGGAAGUCAGGUU   1   ||||||||||||||||||||| targets:7   AGGGAGCACCCUUCAGUCCAA   27 Target Full Sequence	0.0	Sequence 6790 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240795.1	ncRNA:21   UCCCUCGUGGGAAGUCAGGUU   1   ||||||||||||||||||||| targets:7   AGGGAGCACCCUUCAGUCCAA   27 Target Full Sequence	0.0	Sequence 6790 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008655165.2	ncRNA:21   UCCCUCGUGGGAAGUCAGGUU   1   **||=||||*||||||||||| targets:1045   CCGGGGCACACUUCAGUCCAA   1065 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor PCF8 (LOC103633471), mRNA	NA	coding protein	psRNATarget
XM_008661531.2	ncRNA:21   UCCCUCGUGGGAAGUCAGGUU   1   =**||||*||||||||||||| targets:932   GUCGAGCUCCCUUCAGUCCAA   952 Target Full Sequence	2.0	PREDICTED: Zea mays myb-related protein Pp2 (LOC103638691), mRNA	NA	coding protein	psRNATarget
EU972820.1	ncRNA:21   UCCCUCGUGGGAAGUCAGGUU   1   =**||||*||||||||||||| targets:925   GUCGAGCUCCCUUCAGUCCAA   945 Target Full Sequence	2.0	Zea mays clone 388684 mRNA sequence	NA	coding protein	psRNATarget