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BaseInfo

ncRNA ID novel_zma_miR10418
Species Zea mays
Class miRNA
Genome position Chr3:180373281-180373413 [+]
Reference genome RefGen_v4
Source SRR5099742
Length 24
Mature sequence(if miRNA) 110 - UAUGAUGAAUUUGAACUUGAAAUU - 133
Stem-loop(if miRNA) --      A       C        A    A C           --C        G     AUUUUC
  UUUUAA UUCAAAU CAUCAUAU UUAA A AUGCAAAAAAA   AAAAUUCU AGAUA      A
  |||||| ||||||| |||||||| |||| | |||||||||||   |||||||| |||||      C
  AAAGUU AAGUUUA GUAGUAUA AAUU U UAUGUUUUUUU   UUUUAAGA UCUAU      U
UU      C       A        C    C C           CUC        A     GUUUUU
Stem-loop sequence UUUUAAAUUCAAAUCCAUCAUAUAUUAAAACAUGCAAAAAAACAAAAUUCUGAGAUAAUUUUCACUUUUUUGUAUCUAAGAAUUUUCUCUUUUUUUGUAUCUCUUAACAUAUGAUGAAUUUGAACUUGAAAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008669948.2
ncRNA:24   UUAAAGUUCAAGUUUAAGUAGUAU   1
  =||||=||||||*|||||||||||
targets:1978   GAUUUUAAGUUCUAAUUCAUCAUA   2001

2.5 PREDICTED: Zea mays mTERF family protein (LOC100285943), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008669949.2
ncRNA:24   UUAAAGUUCAAGUUUAAGUAGUAU   1
  =||||=||||||*|||||||||||
targets:1963   GAUUUUAAGUUCUAAUUCAUCAUA   1986

2.5 PREDICTED: Zea mays mTERF family protein (LOC100285943), transcript variant X3, mRNA NA coding protein psRNATarget