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BaseInfo

ncRNA ID	novel_zma_miR10417
Species	Zea mays
Class	miRNA
Genome position	Chr3:177566724-177566847 [+]
Reference genome	RefGen_v4
Source	SRR5099742
Length	24
Mature sequence(if miRNA)	101 - UUCCUGGACAAACGAACAAGGCCU - 124
Stem-loop(if miRNA)	--   --        U   C    C   GGCA      AAU       C    UGUUU  CUAAU   GCC  GUUUGUUU UUC GGAA GGA    UGGAAA   UUCUAGC GGUU     CU     U   |||  |||||||| ||| |||| |||    ||||||   ||||||| ||||     ||   CGG  CAAGCAAA AGG CCUU CCU    GUCUUU   AAGGUUG CUAG     GA     U UC   AA        C   U    A   ---G      AAU       A    -UUUU  AUAUA
Stem-loop sequence	GCCGUUUGUUUUUUCCGGAACGGAGGCAUGGAAAAAUUUCUAGCCGGUUUGUUUCUCUAAUUUAUAUAAGUUUUGAUCAGUUGGAAUAAUUUCUGGUCCAUUCCUGGACAAACGAACAAGGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020550419.1	ncRNA:24   UCCGGAACAAGCAAACAGGUCCUU   1   |||*||||||||||||||=||||| targets:4364   AGGGCUUGUUCGUUUGUCUAGGAA   4387 Target Full Sequence	1.5	PREDICTED: Zea mays Transducin/WD40 repeat-like superfamily protein (LOC103650985), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008676582.2	ncRNA:24   UCCGGAACAAGCAAACAGGUCCUU   1   |||*||||||||||||||=||||| targets:5103   AGGGCUUGUUCGUUUGUCUAGGAA   5126 Target Full Sequence	1.5	PREDICTED: Zea mays Transducin/WD40 repeat-like superfamily protein (LOC103650985), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676583.2	ncRNA:24   UCCGGAACAAGCAAACAGGUCCUU   1   |||*||||||||||||||=||||| targets:5138   AGGGCUUGUUCGUUUGUCUAGGAA   5161 Target Full Sequence	1.5	PREDICTED: Zea mays Transducin/WD40 repeat-like superfamily protein (LOC103650985), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020552549.1	ncRNA:24   UCCGGAACAAGCAAACAGGUCCUU   1   |||*=|*||||||||||||||||| targets:1128   AGGGUUCGUUCGUUUGUCCAGGAA   1151 Target Full Sequence	1.0	PREDICTED: Zea mays dentin sialophosphoprotein-related (LOC103653323), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020552546.1	ncRNA:24   UCCGGAACAAGCAAACAGGUCCUU   1   |||*=|*||||||||||||||||| targets:1128   AGGGUUCGUUCGUUUGUCCAGGAA   1151 Target Full Sequence	1.0	PREDICTED: Zea mays dentin sialophosphoprotein-related (LOC103653323), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT040386.1	ncRNA:24   UCCGGAACAAGCAAACAGGUCCUU   1   |||*||||||||*||||||||||* targets:821   AGGGCUUGUUCGGUUGUCCAGGAU   844 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0088H06 mRNA, complete cds	NA	coding protein	psRNATarget
EU948800.1	ncRNA:24   UCCGGAACAAGCAAACAGGUCCUU   1   ***=||||||=*|||||||||||| targets:131   CCCUCUUGUUUCUUUGUCCAGGAA   154 Target Full Sequence	2.5	Zea mays clone 385646 mRNA sequence	NA	coding protein	psRNATarget
EU942956.1	ncRNA:24   UCCGGAACAAGCAAACAGGUCCUU   1   ***=||||||=*|||||||||||| targets:702   CCCUCUUGUUUCUUUGUCCAGGAA   725 Target Full Sequence	2.5	Zea mays clone 1547709 mRNA sequence	NA	coding protein	psRNATarget
KJ727919.1	ncRNA:24   UCCGGAACAAGCAAACAGGUCCUU   1   ***|=|||*||||||||||=|||| targets:903   UAUCUUUGAUCGUUUGUCCGGGAA   926 Target Full Sequence	2.5	Zea mays clone pUT6013 orphans transcription factor (Orphan133) mRNA, partial cds	NA	coding protein	psRNATarget
XM_008683168.2	ncRNA:24   UCCGGAACAAGCAAACAGGUCCUU   1   ***|=|||*||||||||||=|||| targets:1095   UAUCUUUGAUCGUUUGUCCGGGAA   1118 Target Full Sequence	2.5	PREDICTED: Zea mays speckle-type POZ protein (Orphan133), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT039220.1	ncRNA:24   UCCGGAACAAGCAAACAGGUCCUU   1   ***|=|||*||||||||||=|||| targets:1072   UAUCUUUGAUCGUUUGUCCGGGAA   1095 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0001I15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147165.1	ncRNA:24   UCCGGAACAAGCAAACAGGUCCUU   1   ***|=|||*||||||||||=|||| targets:1072   UAUCUUUGAUCGUUUGUCCGGGAA   1095 Target Full Sequence	2.5	Zea mays speckle-type POZ protein (LOC100272712), mRNA	NA	coding protein	psRNATarget
BT060836.1	ncRNA:24   UCCGGAACAAGCAAACAGGUCCUU   1   ***=||||||=*|||||||||||| targets:2247   CCCUCUUGUUUCUUUGUCCAGGAA   2270 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0058E15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165761.1	ncRNA:24   UCCGGAACAAGCAAACAGGUCCUU   1   ***=||||||=*|||||||||||| targets:2247   CCCUCUUGUUUCUUUGUCCAGGAA   2270 Target Full Sequence	2.5	Zea mays Microtubule-associated protein 70-1 (LOC100304320), mRNA	NA	coding protein	psRNATarget