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BaseInfo

ncRNA ID novel_zma_miR10408
Species Zea mays
Class miRNA
Genome position Chr6:39458334-39458411 [+]
Reference genome RefGen_v4
Source SRR1997865;SRR1997866
Length 22
Mature sequence(if miRNA) 1 - CAAAGAUAAGAGUGGGAAAUGG - 22
Stem-loop(if miRNA) --      -     -GU     AU G A    UG AUUUUU U
  CAAAGA UAAGA   GGGAA  G G GCAU  A      G C
  |||||| |||||   |||||  | | ||||  |      |
  GUUUCU AUUCU   UCCUU  C C CGUA  U      C C
GU      C     ACU     -- G -    GU ---GUU A
Stem-loop sequence CAAAGAUAAGAGUGGGAAAUGGGAGCAUUGAAUUUUUGUCCACUUGUUGAUGCCGCUUCCUUCAUCUUACUCUUUGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ063819.1
ncRNA:22   GGUAAAGGGUGAGAAUAGAAAC   1
  *|=|||||||||||*|||||||
targets:214   GCGUUUCCCACUCUCAUCUUUG   235

1.5 TSA: Zea mays contig64942, mRNA sequence NA coding protein psRNATarget