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BaseInfo

ncRNA ID	novel_zma_miR10399
Species	Zea mays
Class	miRNA
Genome position	Chr2:11455626-11455676 [-]
Reference genome	RefGen_v4
Source	SRR5099742
Length	24
Mature sequence(if miRNA)	1 - UCUUUGCCGAGUGUCAGCCGCUGG - 24
Stem-loop(if miRNA)	--  A  UG                A   AG CG  UGACACUCGGCAAAGA U   || ||  ||||||||||||||||   UC GC  ACUGUGAGCCGUUUCU A GG  -  CG                C
Stem-loop sequence	AGACGUGUGACACUCGGCAAAGAAUACUCUUUGCCGAGUGUCAGCCGCUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ067174.1	ncRNA:24   GGUCGCC-GACUGUGAGCCGUUUCU   1   |==|=||-|||=||||||||||||| targets:11   CUGGUGGACUGGCACUCGGCAAAGA   35 Target Full Sequence	3.0	TSA: Zea mays contig02808, mRNA sequence	NA	coding protein	psRNATarget
BT063684.1	ncRNA:24   GGUCGCCGACUGUGAGCCGUUUCU   1   |||*||*||||||||||||||||| targets:1264   CCAACGACUGACACUCGGCAAAGA   1287 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0094N19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175015.1	ncRNA:24   GGUCGCCGACUGUGAGCCGUUUCU   1   |||*||*||||||||||||||||| targets:1264   CCAACGACUGACACUCGGCAAAGA   1287 Target Full Sequence	1.0	Zea mays uncharacterized LOC100382263 (LOC100382263), mRNA	NA	coding protein	psRNATarget
XM_008671736.2	ncRNA:24   GG-UCGCCGACUGUGAGCCGUUUCU   1   ||-||=|*=|||||||||||||||| targets:159   CCGAGUGUUUGACACUCGGCAAAGA   183 Target Full Sequence	2.0	PREDICTED: Zea mays probable serine/threonine-protein kinase PBL28 (LOC103647166), mRNA	NA	coding protein	psRNATarget
JB166664.1	ncRNA:24   GGUCG-CCGACUGUGAGCCGUUUCU   1   ===||-|||*||||||||||||||| targets:23   UUGGCCGGCAGACACUCGGCAAAGA   47 Target Full Sequence	3.0	Sequence 4328 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238333.1	ncRNA:24   GGUCG-CCGACUGUGAGCCGUUUCU   1   ===||-|||*||||||||||||||| targets:23   UUGGCCGGCAGACACUCGGCAAAGA   47 Target Full Sequence	3.0	Sequence 4328 from Patent EP2985353	NA	coding protein	psRNATarget
HI406203.1	ncRNA:24   GGUCG-CCGACUGUGAGCCGUUUCU   1   ===||-|||*||||||||||||||| targets:23   UUGGCCGGCAGACACUCGGCAAAGA   47 Target Full Sequence	3.0	Sequence 4328 from Patent EP2074227	NA	coding protein	psRNATarget
JB167186.1	ncRNA:24   GGUCGCCGACUGUGAGCCGUUUCU   1   =**|=||||||||||||*|||||| targets:96   UGUGUGGCUGACACUCGACAAAGA   119 Target Full Sequence	1.5	Sequence 4850 from Patent EP2559767	NA	coding protein	psRNATarget
HI406725.1	ncRNA:24   GGUCGCCGACUGUGAGCCGUUUCU   1   =**|=||||||||||||*|||||| targets:96   UGUGUGGCUGACACUCGACAAAGA   119 Target Full Sequence	1.5	Sequence 4850 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238855.1	ncRNA:24   GGUCGCCGACUGUGAGCCGUUUCU   1   =**|=||||||||||||*|||||| targets:96   UGUGUGGCUGACACUCGACAAAGA   119 Target Full Sequence	1.5	Sequence 4850 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008658185.2	ncRNA:24   GG-UCGCCGACUGUGAGCCGUUUCU   1   ||-||=|||**|||||||||||||| targets:1731   CCGAGUGGCAAACACUCGGCAAAGA   1755 Target Full Sequence	2.0	PREDICTED: Zea mays putative F-box/LRR-repeat protein At3g58880 (LOC103635804), mRNA	NA	coding protein	psRNATarget
EU952231.1	ncRNA:24   GGUCGCCGACUGUGAGCCGUUUCU   1   |*=||||**||||||||||||||| targets:1500   CGGGCGGGCGACACUCGGCAAAGA   1523 Target Full Sequence	2.0	Zea mays clone 1234152 mRNA sequence	NA	coding protein	psRNATarget
EU962802.1	ncRNA:24   GG-UCGCCGACUGUGAGCCGUUUCU   1   ||-||-||=*|=||||||||||||| targets:1075   CCGAG-GGUCGGCACUCGGCAAAGA   1098 Target Full Sequence	3.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU951327.1	ncRNA:24   GGUCGCCGACUGUGAGCCGUUUCU   1   |=|--|||||||||||||||*||* targets:572   CUA--GGCUGACACUCGGCACAGU   593 Target Full Sequence	2.5	Zea mays clone 695636 mRNA sequence	NA	coding protein	psRNATarget