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BaseInfo

ncRNA ID novel_zma_miR10395
Species Zea mays
Class miRNA
Genome position Chr2:25945289-25945414 [-]
Reference genome RefGen_v4
Source SRR5099742
Length 21
Mature sequence(if miRNA) 1 - UUUUGAACUCCCAAACUAGCC - 21
Stem-loop(if miRNA) --            CCA       -A               AC       U    -        A
  CUAGUUUGGGAG   CAAAACC  GAGGGGGUUGGAGGG  UAAAAUC ACUU CUUAUUCA A
  ||||||||||||   |||||||  |||||||||||||||  ||||||| |||| ||||||||
  GAUCAAACCCUC   GUUUUGG  CUCCCCUAACCUCCC  AUUUUAG UGAA GAAUAAGU A
CC            -AA       GC               CU       -    A        U
Stem-loop sequence CUAGUUUGGGAGCCACAAAACCAGAGGGGGUUGGAGGGACUAAAAUCUACUUCUUAUUCAAAAUUGAAUAAGAAAGUGAUUUUAUCCCCUCCAAUCCCCUCCGGGUUUUGAACUCCCAAACUAGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU956908.1
ncRNA:21   CCGAUCAAACCCUCAAGUUUU   1
  |||||||||||*|||||||||
targets:980   GGCUAGUUUGGAAGUUCAAAA   1000

1.5 Zea mays clone 1577150 mRNA sequence NA coding protein psRNATarget
EU940902.1
ncRNA:21   CCGAUCAAACCCUCAAGUUUU   1
  **|*|||||||||*|||||||
targets:397   AACAAGUUUGGGAAUUCAAAA   417

2.5 Zea mays clone 1168227 mRNA sequence NA coding protein psRNATarget