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BaseInfo

ncRNA ID novel_zma_miR10375
Species Zea mays
Class miRNA
Genome position Chr2:155433660-155433846 [-]
Reference genome RefGen_v4
Source SRR5099742
Length 21
Mature sequence(if miRNA) 1 - CGGACAGUCCGCGGCACAGGG - 21
Stem-loop(if miRNA) -    C  -      C      C    UG              A -       A       U       -       A                U
 CCUG GC GUGGAC GUCCGC CCUG  CAGAGGGCACCGCC C GGUUCUU UUGAGUG UUGGCGC UCCAAAA GGCGUCAACAUACUUU C
 |||| || |||||| |||||| ||||  |||||||||||||| | ||||||| ||||||| ||||||| ||||||| ||||||||||||||||
 GGAC CG CGCCUG CAGGCG GGAC  GUCUCUCGUGGCGG G CCAAGAG AACUCAU AACCGCG AGGUUUU CCGCAGUUGUAUGAAA A
G    A  G      A      C    UG              C A       -       U       G       C                A
Stem-loop sequence CCUGCGCGUGGACCGUCCGCCCCUGUGCAGAGGGCACCGCCACGGUUCUUAUUGAGUGUUUGGCGCUCCAAAAAGGCGUCAACAUACUUUUCAAAAAGUAUGUUGACGCCCUUUUGGAGGCGCCAAUUACUCAAGAGAACCAGCGGCGGUGCUCUCUGGUCAGGCGCGGACAGUCCGCGGCACAGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ096610.1
ncRNA:21   GGGACACGGCGCCUGACAGGC   1
  |||||||||||||||*|||||
targets:13   CCCUGUGCCGCGGACCGUCCG   33

1.5 TSA: Zea mays contig32265, mRNA sequence NA coding protein psRNATarget
EZ096610.1
ncRNA:21   GGGACACGGCGCCUGACAGGC   1
  |||***|||||||||||||||
targets:84   CCCCAAGCCGCGGACUGUCCG   104

3.0 TSA: Zea mays contig32265, mRNA sequence NA coding protein psRNATarget