Search result

BaseInfo

ncRNA ID	osa-miRf10632-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	21
Mature sequence(if miRNA)	NA - CCGGCGAACUCCUCUUCUUCU - NA
Stem-loop(if miRNA)	U     A CU              -         -G  ACCGGCGACAACCCAAACUCUGGCAGAGGGCUGA  UCUCU A  CCGGCGAACUCCUC UUCUUCUCC  GC                                  U  ||||| |  |||||||||||||| |||||||||  ||  GGAGA U  GGUCGUUUGAGGGG AAGAAGGGG  GG                                  G G     A CG              G         GA  GGGAGGGUGGGGAGGGAUGGGGCCCUGGGAUUAA
Stem-loop sequence	UUCUCUAACUCCGGCGAACUCCUCUUCUUCUCCGGCACCGGCGACAACCCAAACUCUGGCAGAGGGCUGAUGAAUUAGGGUCCCGGGGUAGGGAGGGGUGGGAGGGGGAGGGGGAAGAAGGGGGAGUUUGCUGGGCUAAGAGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK111610.1	ncRNA:21   UCUUCUUCUCCUCAA-GCGGCC   1   =||||||||||||||-|||||| targets:3660   GGAAGAAGAGGAGUUUCGCCGG   3681 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013100B16, full insert sequence	NA	coding protein	psRNATarget
XM_015756599.1	ncRNA:21   UCUUCUUCUCCUCAA-GCGGCC   1   =||||||||||||||-|||||| targets:3593   GGAAGAAGAGGAGUUUCGCCGG   3614 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group SKP1-like protein 1A (LOC4346585), transcript variant X1, mRNA	SKP1-like protein 1A(LOC4346585)	coding protein	psRNATarget
XM_015756600.1	ncRNA:21   UCUUCUUCUCCUCAA-GCGGCC   1   =||||||||||||||-|||||| targets:3639   GGAAGAAGAGGAGUUUCGCCGG   3660 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group SKP1-like protein 1A (LOC4346585), transcript variant X2, mRNA	SKP1-like protein 1A(LOC4346585)	coding protein	psRNATarget
XM_015756604.1	ncRNA:21   UCUUCUUCUCCUCAA-GCGGCC   1   =||||||||||||||-|||||| targets:2508   GGAAGAAGAGGAGUUUCGCCGG   2529 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group SKP1-like protein 1A (LOC4346585), transcript variant X5, mRNA	SKP1-like protein 1A(LOC4346585)	coding protein	psRNATarget
AK111519.1	ncRNA:21   UCUUCUUCUCCUCAA-GCGGCC   1   =||||||||||||||-|||||| targets:2509   GGAAGAAGAGGAGUUUCGCCGG   2530 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013002H13, full insert sequence	NA	coding protein	psRNATarget
XM_015756602.1	ncRNA:21   UCUUCUUCUCCUCAA-GCGGCC   1   =||||||||||||||-|||||| targets:787   GGAAGAAGAGGAGUUUCGCCGG   808 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group SKP1-like protein 1A (LOC4346585), transcript variant X4, mRNA	SKP1-like protein 1A(LOC4346585)	coding protein	psRNATarget
XM_015763516.1	ncRNA:21   UCUUCUUCUCCUCAAGCGGCC   1   =|*=||=|||||||||||||| targets:340   GGCGGAGGAGGAGUUCGCCGG   360 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group putative leucine aminopeptidase 1 (LOC4352123), mRNA	putative leucine aminopeptidase 1(LOC4352123)	coding protein	psRNATarget
XM_015790512.1	ncRNA:21   UCUUCUUCUCCUCAAGCGGCC   1   =||||||||||||||||*||* targets:27   GGAAGAAGAGGAGUUCGACGA   47 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107275348 (LOC107275348), mRNA	uncharacterized LOC107275348(LOC107275348)	coding protein	psRNATarget