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BaseInfo

ncRNA ID	novel_zma_miR10346
Species	Zea mays
Class	miRNA
Genome position	Chr2:218758563-218758729 [+]
Reference genome	RefGen_v4
Source	SRR5099742
Length	25
Mature sequence(if miRNA)	1 - AAAACUAAUUACACAAAUAAGGACU - 25
Stem-loop(if miRNA)	--             C A            CA           C       G -        C     UU    CAUGUGAUGC   AAAACUAAUUACA A AUAAGGACUAAA  ACGAGAUAAAU UAUUAAG C UAAUUAAU CAUGA  CGUC          U   ||||||||||||| | ||||||||||||  ||||||||||| ||||||| | |||||||| |||||  ||||          A   UUUUGAUUAAUGU U UAUUCCUGAUUU  UGUUUUGUUUA AUAAUUC G AUUAAUUA GUGCU  UCGU          C UG             A C            AC           A       - U        U     UA    UUUCAAAUGA
Stem-loop sequence	AAAACUAAUUACACAAAUAAGGACUAAACAACGAGAUAAAUCUAUUAAGGCUAAUUAAUCCAUGAUUCGUCCAUGUGAUGCUACAGUAAACUUUUGCUAUUCGUGUAUUAAUUAUGCUUAAUAAAUUUGUUUUGUCAUUUAGUCCUUAUCUAUGUAAUUAGUUUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020537836.1	ncRNA:25   UCAGGAAUAAACACAUUAAUCAAAA   1   |||=|||||**|||||||||||||| targets:923   AGUUCUUAUCCGUGUAAUUAGUUUU   947 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103625804 (LOC103625804), mRNA	NA	coding protein	psRNATarget
BT069230.2	ncRNA:25   UCAGGAAUAAACACAUUAAUCAAAA   1   *|||||||**||||||||||||||| targets:40   UGUCCUUAACUGUGUAAUUAGUUUU   64 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0371D20 mRNA, complete cds	NA	coding protein	psRNATarget
EU947563.1	ncRNA:25   UCAGGAAUAAACACAUUAAUCAAAA   1   |||==*||*|||||||||||*|||| targets:365   AGUUUGUAGUUGUGUAAUUAAUUUU   389 Target Full Sequence	2.5	Zea mays clone 347199 mRNA sequence	NA	coding protein	psRNATarget
XM_020538580.1	ncRNA:25   UCAG-----GAAUAAACACAUUAAUCAAAA   1   |||=-----||||||**||||||||||||* targets:1161   AGUUGUUUGCUUAUUGUUGUAAUUAGUUUC   1190 Target Full Sequence	3.0	PREDICTED: Zea mays ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (LOC103627366), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542565.1	ncRNA:25   UCAGGAAUAAACACAUUAAUCAAAA   1   |**==||||||*|||*||||||||| targets:346   AUAUUUUAUUUUUGUUAUUAGUUUU   370 Target Full Sequence	2.5	PREDICTED: Zea mays acyl-protein thioesterase 1 homolog 1 (LOC103635415), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008679026.2	ncRNA:25   UCAGGAAUAAACACAUUAAUCAAAA   1   |||=*|*||*|*||||||||||||| targets:1889   AGUUGUCAUCUAUGUAAUUAGUUUU   1913 Target Full Sequence	3.0	PREDICTED: Zea mays disulfide oxidoreductase/ electron carrier/ oxidoreductase (LOC100282462), transcript variant X1, mRNA	NA	coding protein	psRNATarget