Search result

BaseInfo

ncRNA ID	novel_zma_miR10345
Species	Zea mays
Class	miRNA
Genome position	Chr2:216068214-216068305 [+]
Reference genome	RefGen_v4
Source	SRR5099742;SRR5100248
Length	21
Mature sequence(if miRNA)	72 - UUCGAUCCAGAUGCAACCGAA - 92
Stem-loop(if miRNA)	--         GG        GG   U     CAC     AUUUAA   CGGUUGUGU  GGGUCGAG  AGA UAAAU   CUUCU      U   |||||||||  ||||||||  ||| |||||   |||||      A   GCCAACGUA  CCUAGCUU  UCU AUUUA   GAGGA      U AA         GA        GA   U     -AA     AUCAAU
Stem-loop sequence	CGGUUGUGUGGGGGUCGAGGGAGAUUAAAUCACCUUCUAUUUAAUAUUAACUAAGGAGAAAUUUAUUCUAGUUCGAUCCAGAUGCAACCGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI402991.1	ncRNA:21   AAGCCAACGUAGACCUAGCUU   1   |||||||||=||||||||||| targets:5   UUCGGUUGCGUCUGGAUCGAA   25 Target Full Sequence	1.5	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
JB163452.1	ncRNA:21   AAGCCAACGUAGACCUAGCUU   1   |||||||||=||||||||||| targets:5   UUCGGUUGCGUCUGGAUCGAA   25 Target Full Sequence	1.5	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:21   AAGCCAACGUAGACCUAGCUU   1   |||||||||=||||||||||| targets:5   UUCGGUUGCGUCUGGAUCGAA   25 Target Full Sequence	1.5	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
EZ056710.1	ncRNA:21   AAGCCAACGUAGACCUAGCUU   1   |||||||||=||||||||||| targets:146   UUCGGUUGCGUCUGGAUCGAA   166 Target Full Sequence	1.5	TSA: Zea mays contig57832, mRNA sequence	NA	coding protein	psRNATarget
BT069589.2	ncRNA:21   AAGCCAACGUAGACCUAGCUU   1   |||||||||||||||||||=| targets:915   UUCGGUUGCAUCUGGAUCGGA   935 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0174I14 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235143.1	ncRNA:21   AAGCCAACGUAGACCUAGCUU   1   |||*|||||=||||||||||| targets:5   UUCUGUUGCGUCUGGAUCGAA   25 Target Full Sequence	2.5	Sequence 1138 from Patent EP2985353	NA	coding protein	psRNATarget
HI403013.1	ncRNA:21   AAGCCAACGUAGACCUAGCUU   1   |||*|||||=||||||||||| targets:5   UUCUGUUGCGUCUGGAUCGAA   25 Target Full Sequence	2.5	Sequence 1138 from Patent EP2074227	NA	coding protein	psRNATarget
JB163474.1	ncRNA:21   AAGCCAACGUAGACCUAGCUU   1   |||*|||||=||||||||||| targets:5   UUCUGUUGCGUCUGGAUCGAA   25 Target Full Sequence	2.5	Sequence 1138 from Patent EP2559767	NA	coding protein	psRNATarget
BT069231.2	ncRNA:21   AAGCCAACGUAGACCUAGCUU   1   |||||||*|=||||||||||| targets:979   UUCGGUUACGUCUGGAUCGAA   999 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0366D18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008650948.2	ncRNA:21   AAGCCAACGUAGACCUAGCUU   1   **|||*||||*|||||||||| targets:2274   CCCGGCUGCAGCUGGAUCGAA   2294 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g57430, chloroplastic (LOC103629856), mRNA	NA	coding protein	psRNATarget